| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 291401 | NA (NA) | 16 (0.280) | 12/128 | 1.2 | 21.6% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 480996 | 58 (1.000) | intergenic (‑288/+258) | tomB/acrB | protein that modulates Hha toxicity/multidrug efflux pump RND permease AcrB | |||||
AGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/291341‑291401‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCAGAGCAATCCTGGTATTAGTGTCACCAATTTCATCTGGCGATAATCCTGAAATGTTATG < NC_000913/480996‑480935 AGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCA > 1:3807413/1‑65AGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCA > 1:4024051/1‑65 CCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCAGA < 1:977315/65‑1 GGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCAGAGCAAT < 1:3436710/65‑1 AGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCAGAGCAATCC > 1:2287107/1‑65 AGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCAGAGCAATCC > 1:4541142/1‑65 GCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCAGAGCAATCCT > 1:2583338/1‑65 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCAGAGCAATCCTGG > 1:2826239/1‑65 CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCAGAGCAATCCTGGT < 1:1615220/65‑1 CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCAGAGCAATCCTGGT < 1:3108132/65‑1 ACTAAATCAGTAAGTTGGCAGCATCACCTTCAGAGCAATCCTGGTATTAGTGTCACCAATTTCAT > 1:3261424/1‑65 ACTAAATCAGTAAGTTGGCAGCATCACCTTCAGAGCAATCCTGGTATTAGTGTCACCAATTTCAT > 1:4412597/1‑65 TCAGTAAGTTGGCAGCATCACCTTCAGAGCAATCCTGGTATTAGTGTCACCAATTTCATCTGGCG > 1:1006199/1‑65 AGTTGGCAGCATCACCTTCAGAGCAATCCTGGTATTAGTGTCACCAATTTCATCTGGCGATAATC > 1:2276393/1‑65 CATCACCTTCAGAGCAATCCTGGTATTAGTGTCACCAATTTCATCTGGCGATAATCCTGAAATGT < 1:696768/65‑1 ACCTTCAGAGCAATCCTGGTATTAGTGTCACCAATTTCATCTGGCGATAATCCTGAAATGTTATG > 1:835305/1‑65 AGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/291341‑291401‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCAGAGCAATCCTGGTATTAGTGTCACCAATTTCATCTGGCGATAATCCTGAAATGTTATG < NC_000913/480996‑480935 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |