| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 291401 | NA (NA) | 16 (0.280) | 12/128 | 1.2 | 21.6% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 480996 | 58 (1.000) | intergenic (‑288/+258) | tomB/acrB | protein that modulates Hha toxicity/multidrug efflux pump RND permease AcrB | |||||
AGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTG > NC_000913/291341‑291458 | aGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGaac > 1:876559/1‑64 (MQ=14)aGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAt > 1:657917/1‑65 (MQ=33)aGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAt > 1:4497536/1‑65 (MQ=33)aGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAt > 1:3284570/1‑65 (MQ=33)aGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAt > 1:1499682/1‑65 (MQ=33)aGCCACTCGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAt > 1:1734890/1‑65 (MQ=18) gCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAtt < 1:2841969/65‑1 (MQ=35) ccACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAttt > 1:1821117/1‑65 (MQ=37) ggAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGc < 1:961556/65‑1 (MQ=255) ggAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGc < 1:488764/65‑1 (MQ=255) aGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGACTTTTCAGccc > 1:2166167/1‑65 (MQ=255) aGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGccc > 1:80951/1‑65 (MQ=255) aGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGccc > 1:4259433/1‑65 (MQ=255) gCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCg > 1:3124162/1‑65 (MQ=255) gCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCg > 1:1496128/1‑65 (MQ=255) aCCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGa > 1:1129692/1‑65 (MQ=255) aCCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGa > 1:543489/1‑65 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGtt < 1:1409075/65‑1 (MQ=255) aaaaCGCCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTc < 1:1343467/65‑1 (MQ=255) aaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTc < 1:4485084/65‑1 (MQ=255) aaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTc < 1:4233932/65‑1 (MQ=255) aaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCa > 1:4170980/1‑65 (MQ=255) aaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCAc > 1:1987457/1‑65 (MQ=255) acCATCATTCACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTa < 1:3642668/65‑1 (MQ=255) acCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTGAGCCCGGATGTTTCACGTa < 1:4493503/65‑1 (MQ=255) acCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTa < 1:2710297/65‑1 (MQ=255) acCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTa < 1:390546/65‑1 (MQ=255) acCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTa < 1:465249/65‑1 (MQ=255) acCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTa > 1:1712701/1‑65 (MQ=255) catcatACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTAcc < 1:493628/65‑1 (MQ=255) tACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGt < 1:4148750/65‑1 (MQ=255) tACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGt < 1:3671629/65‑1 (MQ=255) tACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGt < 1:1619283/65‑1 (MQ=255) acacTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTc > 1:3884684/1‑65 (MQ=255) acacTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTc < 1:266847/65‑1 (MQ=255) acacTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTc > 1:3255261/1‑65 (MQ=255) acTAAATCAGTAAGTTGGCAGCATCACCGACTTTTCAGCCCGGATGTTTCACGTACCTATGTCGa > 1:2185171/1‑65 (MQ=255) acTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGa > 1:1787031/1‑65 (MQ=255) acTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGa > 1:4020085/1‑65 (MQ=255) acTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGa > 1:2428621/1‑65 (MQ=255) acTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGa > 1:4285736/1‑65 (MQ=255) acTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGa > 1:4437413/1‑65 (MQ=255) acTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGa > 1:2160758/1‑65 (MQ=255) acTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGa > 1:2030342/1‑65 (MQ=255) acTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGa > 1:2754122/1‑65 (MQ=255) acTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGa > 1:668280/1‑65 (MQ=255) acTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGa > 1:687324/1‑65 (MQ=255) acTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGa > 1:831840/1‑65 (MQ=255) acTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGa > 1:844155/1‑65 (MQ=255) acTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGa > 1:1066883/1‑65 (MQ=255) acTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGa > 1:902461/1‑65 (MQ=255) acTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGa > 1:2880559/1‑65 (MQ=255) acTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGa > 1:3178469/1‑65 (MQ=255) acTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGa > 1:1470463/1‑65 (MQ=255) acTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACCTACCTCTGTCGa > 1:1008180/1‑65 (MQ=255) tAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAat < 1:336554/65‑1 (MQ=255) aTCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATc > 1:781344/1‑65 (MQ=255) aTCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATc > 1:2634258/1‑65 (MQ=255) tCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCt > 1:2518310/1‑65 (MQ=255) tCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCt > 1:3000863/1‑65 (MQ=255) tCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCt > 1:1538489/1‑65 (MQ=255) tCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCt > 1:1872869/1‑65 (MQ=255) tCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCt > 1:3318020/1‑65 (MQ=255) tCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCt > 1:2365952/1‑65 (MQ=255) aaGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCg < 1:349916/65‑1 (MQ=255) aaGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCg < 1:2472546/65‑1 (MQ=255) aGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGa > 1:1299568/1‑65 (MQ=255) aGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGa > 1:1505629/1‑65 (MQ=255) aGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGa > 1:2719046/1‑65 (MQ=255) aGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGa > 1:1032753/1‑65 (MQ=255) aGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGCCCGa > 1:749908/1‑65 (MQ=255) gTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGAt > 1:2782748/1‑65 (MQ=255) ggCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAg > 1:918490/1‑65 (MQ=255) gcagcaTCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAgg < 1:1068560/65‑1 (MQ=255) cagcaTCACCGAATTTTCAGCCCGTATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGt < 1:3766581/65‑1 (MQ=255) cagcaTCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGt > 1:2118752/1‑65 (MQ=255) gcaTCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTg > 1:4448975/1‑65 (MQ=255) gcaTCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTg > 1:2522588/1‑65 (MQ=255) gcaTCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTg > 1:3934068/1‑65 (MQ=255) | AGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTG > NC_000913/291341‑291458 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |