| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 481157 | 54 (0.930) | 15 (0.270) | 10/124 | 1.4 | 22.3% | intergenic (‑449/+97) | tomB/acrB | protein that modulates Hha toxicity/multidrug efflux pump RND permease AcrB |
| ? | NC_000913 | 1049778 = | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region | |||||
TTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTAATACTGGTTTTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/481092‑481157‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGT > NC_000913/1049778‑1049826 TTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTAATACTGGTTTTC > 1:656040/1‑65TTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTAATACTGGTTTTC > 1:3184517/1‑65TTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTAATACTGGTTTTC > 1:271398/1‑65 ATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTAATACTGGTTTTCGGGTG > 1:1528911/1‑65 ATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTAATACTGGTTTTCGGGTG > 1:2551851/1‑65 ATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTAATACTGGTTTTCGGGTGATGC < 1:3354552/65‑1 ATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTAATACTGGTTTTCGGGTGATGC < 1:3234676/65‑1 TATTTTTTATGAATTTTATCCGTGGTTAATACTGGTTTTCGGGTGATGCTGCCAACTTACTGATT > 1:2965084/1‑65 TTTTTATGAATTTTATCCGTGGTTAATACTGGTTTTCGGGTGATGCTGCCAACTTACTGATTTAG > 1:976243/1‑65 cTTTATGAATTTTATCCGTGGTTAATACTGGTTTTCGAGTGATGCTGCCAACTTACTGATTTAGT < 1:756130/64‑1 TTTTATGAATTTTATCCGTGGTTAATCCTGGTTTTCGGGTGATGCTGCCAACTTACTGATTTAGT < 1:3852895/65‑1 TTTTATGAATTTTATCCGTGGTTAATACTGGTTTTCGGGTGATGCTGCCAACTTACTGATTTAGT < 1:2098103/65‑1 TTTTATGAATTTTATCCGTGGTTAATACTGGTTTTCGGGTGATGCTGCCAACTTACTGATTTAGT < 1:1337342/65‑1 TTATGAATTTTATCCGTGGTTAATACTGGTTTTCGGGTGATGCTGCCAACTTACTGATTTAGTGT < 1:1449398/65‑1 ATGAATTTTATCCGTGGTTAATACTGGTTTTCGGGTGATGCTGCCAACTTACTGATTTAGTGTAT < 1:2593231/65‑1 ATCCGTGGTTAATACTGGTTTTCGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTT < 1:4425321/65‑1 TGGTTAATACTGGTTTTCGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGA < 1:1614583/65‑1 TTAATTCTTGTTTTCGGGTTATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGT < 1:4353253/65‑1 TTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTAATACTGGTTTTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/481092‑481157‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGT > NC_000913/1049778‑1049826 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |