| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 486,122 | IS1 (+) +8 bp | coding (362‑369/648 nt) | acrR → | DNA‑binding transcriptional repressor AcrR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 290634 = | NA (NA) | 89 (1.530) | 38/128 | 0.0 | 98.7% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 486122 = | 1 (0.020) | coding (362/648 nt) | acrR | DNA‑binding transcriptional repressor AcrR | |||||
| * | ? | NC_000913 | = 291401 | NA (NA) | 28 (0.490) | 12/126 | 1.2 | 96.1% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 486129 | 1 (0.020) | coding (369/648 nt) | acrR | DNA‑binding transcriptional repressor AcrR | |||||
Only 100 of 120 total aligned reads displayed.
CAGAAGAACGGCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCT‑CTGTCTGGAAAGTTATGACCGTATAGAACAAACGT > NC_000913/486065‑486193 | aaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAGAAATg < 1:3073946‑M2/8‑1 (MQ=255)aaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAGAAATg > 1:733206‑M2/58‑65 (MQ=255)aaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAGAAATg > 1:2011335‑M2/58‑65 (MQ=255)aaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAGAAATg > 1:4559952‑M2/58‑65 (MQ=255) aagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAGAAATgg > 1:231201‑M2/57‑65 (MQ=255) gtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAGAAATGGCt > 1:3119651‑M2/55‑65 (MQ=255) gtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAGAAATGGCt > 1:449004‑M2/55‑65 (MQ=255) catcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAGAAATGGCtgt < 1:356992‑M2/13‑1 (MQ=255) atcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAGAAATGGCtgtt < 1:3758370‑M2/14‑1 (MQ=255) cgggcattatctgaacataaaacgctatcaataagttggagtcattaccGAGAAATGGCtgttgt < 1:771338‑M2/16‑1 (MQ=255) cGGCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGggtgatgc > 1:626797‑M2/1‑57 (MQ=255) cGGCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGggtgatgc > 1:1445023‑M2/1‑57 (MQ=255) ggCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGggtgatgct < 1:2813754‑M2/65‑10 (MQ=255) ggCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGggtgatgct > 1:1357496‑M2/1‑56 (MQ=255) ggcattatctgaacataaaacactatcaataagttggagtcattaccGAGAAATGGCTGTTGTGc > 1:164388‑M2/48‑65 (MQ=255) ggcattatctgaacataaaacactatcaataagttggagtcattaccGAGAAATGGCTGTTGTGc > 1:8113‑M2/48‑65 (MQ=255) ggcattatctgaacataaaacactatcaataagttggagtcattaccGAGAAATGGCTGTTGTGc > 1:394937‑M2/48‑65 (MQ=255) ggcattatctgaacataaaacactatcaataagttggagtcattaccGAGAAATGGCTGTTGTGc > 1:3374929‑M2/48‑65 (MQ=255) ggcattatctgaacataaaacactatcaataagttggagtcattaccGAGAAATGGCTGTTGTGc > 1:4461741‑M2/48‑65 (MQ=255) gcattatctgaacataaaacactatcaataagttggagtcattaccGAGAAATGGCTGTTGTGCa > 1:3158960‑M2/47‑65 (MQ=255) gTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGggtgatgctgcc > 1:3485215‑M2/1‑53 (MQ=255) gTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGggtgatgctgcc > 1:3486444‑M2/1‑53 (MQ=255) atctgaacataaaacactatcaataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAgg < 1:2850735‑M2/24‑1 (MQ=255) atctgaacataaaacactatcaataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAgg < 1:3715594‑M2/24‑1 (MQ=255) tctgaacataaaacactatcaataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGc > 1:1918943‑M2/41‑65 (MQ=255) tctgaacataaaacactatcaataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGc > 1:1216565‑M2/41‑65 (MQ=255) tctgaacataaaacactatcaataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGc > 1:4226572‑M2/41‑65 (MQ=255) tctgaacataaaacactatcaataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGc > 1:3170021‑M2/41‑65 (MQ=255) tctgaacataaaacactatcaataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGc > 1:2742534‑M2/41‑65 (MQ=255) tctgaacataaaacactatcaataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGc > 1:3979949‑M2/41‑65 (MQ=255) tctgaacataaaacactatcaataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGc > 1:117113‑M2/41‑65 (MQ=255) tctgaacataaaacactatcaataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGc < 1:557468‑M2/25‑1 (MQ=255) tctgaacataaaacactatcaataagttggagtcattaccGAGAAATGGCTGCTGTGCAACAGGc > 1:3910338‑M2/41‑65 (MQ=255) tGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGggtgatgctgccaacttactg < 1:2940354‑M2/65‑22 (MQ=255) aacataaaacactatcaataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGCACaa < 1:1164013‑M2/29‑1 (MQ=255) aacataaaacactatcaataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGCACaa < 1:2612916‑M2/29‑1 (MQ=255) aacataaaacactatcaataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGCACaa > 1:1371010‑M2/37‑65 (MQ=255) gATGGAGATTATATTCGACAAATGCGAATTTGTCGGAGAAATGggtgatgctgccaacttactga > 1:4560777‑M2/1‑43 (MQ=255) gATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGggtgatgctgccaacttactga > 1:424239‑M2/1‑43 (MQ=255) gATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGggtgatgctgccaacttactga > 1:3466828‑M2/1‑43 (MQ=255) acataaaacactatcaataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGCACAAc < 1:4404407‑M2/30‑1 (MQ=255) acataaaacactatcaataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGCACAAc < 1:3162869‑M2/30‑1 (MQ=255) acataaaacactatcaataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGCACAAc > 1:1304436‑M2/36‑65 (MQ=255) acataaaacactatcaataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGCACAAc < 1:3627758‑M2/30‑1 (MQ=255) acataaaacactatcaataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGCACAAc < 1:2382339‑M2/30‑1 (MQ=255) acataaaacactatcaataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGCACAAc < 1:535802‑M2/30‑1 (MQ=255) acataaaacactatcaataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGCACAAc < 1:1943073‑M2/30‑1 (MQ=255) taaaacactatcaataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGCACAACGTa < 1:3528089‑M2/33‑1 (MQ=255) aaacactatcaataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGCACAACGTAAt > 1:2092592‑M2/31‑65 (MQ=255) gaTTATATTCCACAAATGCGAATTTGTCGGAGAAATGggtgatgctgccaacttactgatttagt > 1:4218152‑M2/1‑37 (MQ=255) gaTTATATTCCACAAATGCGAATTTGTCGGAGAAATGggtgatgctgccaacttactgatttagt > 1:106696‑M2/1‑37 (MQ=255) gaTTATATTCCACAAATGCGAATTTGTCGGAGAAATGggtgatgctgccaacttactgatttagt > 1:1666581‑M2/1‑37 (MQ=255) gaTTATATTCCACAAATGCGAATTTGTCGGAGAAATGggtgatgctgccaacttactgatttagt > 1:2407017‑M2/1‑37 (MQ=255) gaTTATATTCCACAAATGCGAATTTGTCGGAGAAATGggtgatgctgccaacttactgatttagt > 1:1134299‑M2/1‑37 (MQ=255) gaTTATATTCCACAAATGCGAATTTGTCGGAGAAATGggtgatgctgccaacttactgatttagt > 1:2712133‑M2/1‑37 (MQ=255) acactctcaataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGCACAACGTAAtct > 1:4530847‑M2/29‑65 (MQ=255) acactatcaataagttggagtcattaccGAGAAATGGCTGTTGTTCAACAGGCACAACGTAAtct > 1:502620‑M2/29‑65 (MQ=255) acactatcaataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGCACAACGTAAtct > 1:1526347‑M2/29‑65 (MQ=255) acactatcaataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGCACAACGTAAtct > 1:4063668‑M2/29‑65 (MQ=255) acactatcaataagttggagtcattaccGAGAAATGGCTGGTGTGCAACAGGCACAACGCTAtct > 1:4089757‑M2/29‑65 (MQ=255) aTTATATTCCACAAATGCGAATTTGTCGGAGAAATGggtgatgctgccaacttactgatttagtg < 1:2444236‑M2/65‑30 (MQ=255) atatTCCACAAATGCGAATTTGTCGGAGAAATGggtgatgctgccaacttactgatttagtgtat < 1:3746116‑M2/65‑33 (MQ=255) atatTCCACAAATGCGAATTTGTCGGAGAAATGggtgatgctgccaacttactgatttagtgtat < 1:206345‑M2/65‑33 (MQ=255) tatcaataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCt‑ctgt < 1:2404916‑M2/41‑1 (MQ=255) gatcaataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCt‑ctgt < 1:1458027‑M2/41‑1 (MQ=255) atcaataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCt‑ctgtc < 1:3550062‑M2/42‑1 (MQ=255) tCCACAAATGCGAATTTGTCGGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCt‑ctgtctg > 1:3227498/1‑65 (MQ=255) caataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCt‑ctgtctg > 1:1600664‑M2/22‑65 (MQ=255) aataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCtcctgtctc > 1:4183239‑M2/21‑64 (MQ=255) cacaAATGCGAATTTGTCGGAGAAATGggtgatgctgccaacttactgatttagtgtatgatggt > 1:2341261‑M2/1‑27 (MQ=255) taagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCT‑CTGTCTGGaa > 1:4428861‑M2/19‑65 (MQ=255) agttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCT‑CTGTCTGGAAAg < 1:479179‑M2/49‑1 (MQ=255) agttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCT‑CTGTCTGGAAAg > 1:2591856‑M2/17‑65 (MQ=255) agttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGCAAAAAGGAATCT‑ATGTCTGGAAAg > 1:2017311‑M2/17‑65 (MQ=255) agttggagtcattaccGAGAAATGGCTGTTATGGAACAGGGACAACGGAATCT‑CTGTCTGGAAAg > 1:232452‑M2/17‑65 (MQ=255) agttggagtcattaccGAGAAATGGCTGATGTGCAACAGGCGCAACGTAATCT‑CTGTCTGGAAAg < 1:2170114‑M2/49‑1 (MQ=255) aaaTGCGAATTTGTCGGAGAAATGggtgatgctgccaacttactgatttagtgtatgatggtgtt > 1:4146168‑M2/1‑24 (MQ=255) aaaTGCGAATTTGTCGGAGAAATGggtgatgctgccaacttactgatttagtgtatgatggtgtt > 1:443881‑M2/1‑24 (MQ=255) aaaTGCGAATTTGTCGGAGAAATGggtgatgctgccaacttactgatttagtgtatgatggtgtt > 1:3751553‑M2/1‑24 (MQ=255) aaaTGCGAATTTGTCGGAGAAATGggtgatgctgccaacttactgatttagtgtatgatggtgtt > 1:1352560‑M2/1‑24 (MQ=255) aaaTGCGAATTTGTCGGAGAAATGggtgatgctgccaacttactgatttagtgtatgatggtgtt > 1:3460416‑M2/1‑24 (MQ=255) ttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCT‑CTGTCTGGAAAGtt < 1:4353003‑M2/51‑1 (MQ=255) gtcattaccGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCT‑CTGTCTGGAAAGTTATGAc < 1:4049855‑M2/56‑1 (MQ=255) tcattaccGAGAAATGGCTGTTGTGCAACAGGCACAAAGTAATTT‑CTGTCTGGAAAGTTAtgaac > 1:3884020‑M2/9‑63 (MQ=255) attaccGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCT‑CTGTCTGGAAAGTTATGACCGt < 1:821111‑M2/59‑1 (MQ=255) attaccGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCT‑CTGTCTGGAAAGTTATGACCGt < 1:1251293‑M2/59‑1 (MQ=255) attaccGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCT‑CTGTCTGGAAAGTTATGACCGt < 1:4142435‑M2/59‑1 (MQ=255) accGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCT‑CTGTCTGGAAAGTTATGACCGtata > 1:124300‑M2/4‑65 (MQ=255) accGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCT‑CTGTCTGGAAAGCTATGACCGtata > 1:3282807‑M2/4‑65 (MQ=255) gcagaAATGGCTGTTGTGCAACAGGCACAACGTAATCT‑CTGTCTGGAAAGTTATGACCGTATAGa < 1:1014165/63‑1 (MQ=255) cGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCT‑CTGTCTGGAAAGTTATGACCGTATAGa < 1:4531306‑M2/64‑1 (MQ=255) cGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCT‑CTGTCTGGAAAGTTATGACCGTATAGa < 1:4485067‑M2/64‑1 (MQ=255) cGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCT‑CTGTCTGGAAAGTTATGACCGTATAGa < 1:457285‑M2/64‑1 (MQ=255) cGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCT‑CTGTCTGGAAAGTTATGACCGTATAGa < 1:2457459‑M2/64‑1 (MQ=255) gaAATGGCTGTTGTGCAACAGGCACAACGGAATCT‑CTGTCCGGAAAGTTATGACCGTATAGAACa > 1:1640057/1‑65 (MQ=255) aaTGGCTGTTGTGCAACAGGCACAACGTAATCT‑CTGTCTGGAAAGTTATGACCGTATAGAACaaa < 1:135135/65‑1 (MQ=255) tGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttt < 1:3805428‑M2/65‑64 (MQ=255) tGGCTGTTGTGCAACAGGCACAACGTAATCT‑CTGTCTGGAAAGTTATGACCGTATAGAACAAACg < 1:3638348/65‑1 (MQ=255) tGGCTGTTGTGCAACAGGCACAACGTAATCT‑CTGTCTGGAAAGTTATGACCGTATAGAACAAACg < 1:721452/65‑1 (MQ=255) tGGCTGTTGTGCAACAGGCACAACGTAATCT‑CTGTCTGGAAAGTTATGACCGTATAGAACAAACg < 1:2986605/65‑1 (MQ=255) | CAGAAGAACGGCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCT‑CTGTCTGGAAAGTTATGACCGTATAGAACAAACGT > NC_000913/486065‑486193 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |