| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 486,122 | IS1 (+) +8 bp | coding (362‑369/648 nt) | acrR → | DNA‑binding transcriptional repressor AcrR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 257908 = | NA (NA) | 81 (1.520) | 34/134 | 0.1 | 100% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 486122 = | 0 (0.000) | coding (362/648 nt) | acrR | DNA‑binding transcriptional repressor AcrR | |||||
| * | ? | NC_000913 | = 291401 | NA (NA) | 78 (1.480) | 28/132 | 0.2 | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 486129 | 0 (0.000) | coding (369/648 nt) | acrR | DNA‑binding transcriptional repressor AcrR | |||||
AAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/291334‑291401‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCATTTCTCCGACAAATTCGCATTTGTGGAATATAATCTCCATCAATAATCGACGCCGTTCTTCTGTC < NC_000913/486129‑486063 aacCAGAAGCCACTGGAGCACCTCAAAAACGCCATCATACACTAAATCAGTAAGTTGGCAGCATCACC < 1:3113726/65‑1AAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC < 1:2603432/68‑1AAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC < 1:1643232/68‑1AAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC < 1:110765/68‑1AAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC < 1:1003463/68‑1AAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC < 1:470288/68‑1AAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC < 1:1921000/68‑1AAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC < 1:1233210/68‑1AAACAAAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC < 1:2038185/68‑1AAACAAAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC < 1:3546205/68‑1 AGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATTTCT > 1:3126786/1‑68 ACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGA < 1:3704773/68‑1 GGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAA > 1:2765891/1‑68 GGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAA > 1:3922165/1‑68 GAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAA > 1:3216756/1‑68 AGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAAT > 1:562383/1‑68 AGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAAT > 1:2160018/1‑68 AGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAAT > 1:3452561/1‑68 AGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAAT > 1:2662849/1‑68 AGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAAT > 1:3558051/1‑68 AGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAAT > 1:139623/1‑68 AGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAAT < 1:1321813/68‑1 cCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAATT > 1:629914/2‑68 GCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAATT > 1:1581606/1‑68 GCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAATT > 1:1084300/1‑68 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAATTCG > 1:339709/1‑68 agCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAATTCGCA < 1:75996/66‑1 CTCAAAAACACCANCATACACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAATTCGCA < 1:666562/68‑1 AAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGT < 1:1911782/68‑1 AAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGT < 1:3663956/68‑1 AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGTG > 1:852221/1‑68 AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGTG > 1:927341/1‑68 AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGTG > 1:1036139/1‑68 AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGTG > 1:2763259/1‑68 AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGTG > 1:2393694/1‑68 AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGTG > 1:484400/1‑68 cagATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGTGGAA < 1:942833/65‑1 ACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGGCAAATTCGCATTTGTGGAA > 1:1891525/1‑68 cagTCATACACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGTGGAAT < 1:3945471/65‑1 agATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGTGGAAT < 1:1972681/66‑1 CCATCATGCACTAAATCAGTAAGTTGGCAGCATCTCCCATTTCTCCGACAAATTCGCATTTGTGGAAT < 1:4137630/68‑1 CCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGTGGAAT < 1:2344974/68‑1 CCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGTGGAAT < 1:1811084/68‑1 CCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGTGGAAT < 1:2993007/68‑1 CCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGTGGAAT < 1:833237/68‑1 CCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGTGGAAT < 1:2103724/68‑1 CCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGTGGAAT < 1:1219195/68‑1 ATACACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGTGGAATATAAT < 1:3056175/68‑1 ACACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGTGGAATATAATCT > 1:3684677/1‑68 CACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGTGGAATATAATCTC > 1:1555286/1‑68 ACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGTGGAATATAATCTCt > 1:1408572/1‑67 ACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGTGGAATATAATCTCa > 1:1302483/1‑67 ACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGTGGAATATAATCTCC > 1:995870/1‑68 ACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGTGGAATATAATCTCC > 1:3549093/1‑68 ACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGTGGAATATAATCTCC > 1:860911/1‑68 ACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGTGGAATATAATCTCC > 1:1281563/1‑68 ACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGTGGAATATAATCTCC > 1:3064625/1‑68 ACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGTGGAATATAATCTCC > 1:2701625/1‑68 ACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGTGGAATATAATCTCC > 1:2691399/1‑68 ACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGTGGAATATAATCTCC > 1:1762413/1‑68 ACTAAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGTGGAATATAATCTCC > 1:1985504/1‑68 AAATCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGTGGAATATAATCTCCATC < 1:963930/68‑1 AAATCAGTAAGTTGGCAGCAGCACCCNTTTCTCCGACAAATTCGCATTTGTGGAATATAATCTCCATC < 1:3264801/68‑1 TCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGTGGAATATAATCTCCATCAAT > 1:1123520/1‑68 TCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGTGGAATATAATCTCCATCAAT > 1:1680435/1‑68 TCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGTGGAATATAATCTCCATCAAT > 1:731354/1‑68 TCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGTGGAATATAATCTCCATCAAT < 1:2212590/68‑1 TCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGTGGAATATAATCTCCATCAAT > 1:2360681/1‑68 TCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGTGGAATATAATCTCCATCAAT > 1:3517868/1‑68 TCAGTAAGTTGGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGTGGAATATAATCTCCATCAAT > 1:2418387/1‑68 TAAGTTGGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGTGGAATATAATCTCCATCAATAATC > 1:849953/1‑68 TAAGTTGGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGTGGAATATAATCTCCATCAATAATC > 1:1866613/1‑68 AGTTGGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGTGGAATATAATCTCCATCAATAATCGA > 1:434172/1‑68 AGTTGGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGTGGAATATAATCTCCATCAATAATCGA > 1:1130614/1‑68 AGTTGGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGTGGAATATAATCTCCATCAATAATCGA > 1:542704/1‑68 AGTTGGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGTGGAATATAATCTCCATCAATAATCGA > 1:3136600/1‑68 GGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGTGGAATATAATCTCCATCAATAATCGACGCC > 1:3417902/1‑68 GGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGTGGAATATAATCTCCATCAATAATCGACGCC < 1:4153888/68‑1 GGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGTGGAATATAATCTCCATCAATAATCGACGCC < 1:2316239/68‑1 GGCAGCATCACCCATTTCTCCGACAAATTCGCATTTGTGGAATATAATCTCCATCAATAATCGACGCC < 1:2625374/68‑1 CAGCATCACCCATTTCTCCGACAAATTCGCATTTGTGGAATATAATCTCCATCAATAATCGACGCCGT < 1:1950844/68‑1 CAGCATCACCCATTTCTCCGACAAATTCGCATTTGTGGAATATAATCTCCATCAATAATCGACGCCGT < 1:2822080/68‑1 CAGCATCACCCATTTCTCCGACAAATTCGCATTTGTGGAATATAATCTCCATCAATAATCGACGCCGT < 1:376042/68‑1 CAGCATCACCCATTTCTCCGACAAATTCGCATTTGTGGAATATAATCTCCATCAATAATCGACGCCGT < 1:2313929/68‑1 GCATCACCCATTTCTCCGACAAATTCGCATTTGTGGAATATAATCTCCATCAATAATCGACGCAGTTC > 1:380916/1‑68 ACCCAATTCTCCGACAAATTCGCATTTGTGGAATATAATCTCCATCAATAATCGACGCCGTTCTTCTG > 1:2437655/1‑68 CCCATTTCTCCGACAAATTCGCATTTGTGGAATATAATCTCCATCAATAATCGACGCCGTTCTTCTGT < 1:4026907/68‑1 CCCATTTCTCCGACAAATTCGCATTTGTGGAATATAATCTCCATCAATAATCGACGCCGTTCTTCTGT < 1:3988476/68‑1 CCATTTCTCCGACAAATTCGCATTTGTGGAATATAATCTCCATCAATAATCGACGCCGTTCTTCTGTC > 1:1948252/1‑68 CCATTTCTCCGACAAATTCGCATTTGTGGAATATAATCTCCATCAATAATCGACGCCGTTCTTCTGTC > 1:3947853/1‑68 AAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/291334‑291401‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCATTTCTCCGACAAATTCGCATTTGTGGAATATAATCTCCATCAATAATCGACGCCGTTCTTCTGTC < NC_000913/486129‑486063 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |