New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	481457 =	24 (0.450)	26 (0.540)	20/120	0.4	55.0%	coding (2947/3150 nt)	acrB	multidrug efflux pump RND permease AcrB
	?	NC_000913	= 481487	21 (0.440)					coding (2917/3150 nt)	acrB	multidrug efflux pump RND permease AcrB

GGTCTGATTGAAGCGACGCTTGATGCGGTGCGGATGCGTTTACGTCCGATCCTGATGACCTCGCTGGCGTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/481529‑481457 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgtttaCGTCCGATCCTGATGACCTCGCTGGCGTTTATCCTCGGCGTTATGCCGCTGGTTATCAGTACTGG  <  NC_000913/481487‑481423                                                                                                                                            GGTCTGATTGAAGCGACGCTTGATGCGGTGCGGATGCGTTTACGTCCGATCCTGATGACCTCGCTGGC                                                                        >  1:821880/1‑68   TCTGATTGAAGCGACGCTTGATGCGGTGCGGATGCGTTTACGTCCGATCCTGATGACCTCGCTGGCGT                                                                      >  1:1129427/1‑68   TCTGATTGAAGCGACGCTTGATGCGGTGCGGATGCGTTTACGTCCGATCCTGATGACCTCGCTGGCGT                                                                      <  1:694516/68‑1   TCTGATTGAAGCGACGCTTGATGCGGTGCGGATGCGTTTACGTCCGATCCTGATGACCTCGCTGGCGT                                                                      <  1:4122562/68‑1   TCTGATTGAAGCGACGCTTGATGCGGTGCGGATGCGTTTACGTCCGATCCTGATGACCTCGCGGGCGT                                                                      >  1:908323/1‑68        TTGAAGCGACGCTTGATGCGGTGCGGATGCGTTTACGTCCGATCCTGATGACCTCGCTGGCGTTTACG                                                                 >  1:1651428/1‑68         TGAAGCGACGCTTGATGCGGTGCGGATGCGTTTACGTCCGATCCTGATGACCTCGCTGGCGTTTACGT                                                                <  1:1225134/68‑1             GCGACGCTTGATGCGGTGCGGATGCGTTTACGTCCGATCCTGATGACCTCGGCGGCGTTTACGTCCGA                                                            >  1:3229658/1‑68             GCGACGCTTGATGCGGTGCGGATGCGTTTACGTCCGATCCTGATGACCTCGCTGGCGTTTACGTCCGA                                                            >  1:3881727/1‑68              CGACGCTTGATGGGGTGCGGATGCGTTTACGTCCGATCCTGATGACCTCGCTGGCGTTTACGTCCGAT                                                           <  1:488127/68‑1              CGACGCTTGATGCGGTGCGGATGCGTTTACGTCCGATCCTGATGACCTCGCTGGCGTTTACGTCCGAT                                                           <  1:3009224/68‑1                ACGCTTGATGCGGTGCGGATGCGTTTACGTCCGATCCTGATGACCTCGCTGGCGTTTACGTCCGATCC                                                         <  1:244318/68‑1                   CTTGATGCGGTGCGGATGCGTTTACGTCCGATCCTGATGACCTCGCTGGCGTTTACGTCCGATCCTGA                                                      <  1:2395855/68‑1                          CGGTGCGGATGCGTTTACGTCCGATCCTGATGACCTCGCTGGCGTTTACGTCCGATCCTGATGACCTC                                               <  1:678742/68‑1                           GGTGCGGATGCGTTTACGTCCGATCCTGATGACCTCGCTGGCGTTTACGTCCGATCCTGATGACCTCG                                              <  1:2649491/68‑1                                GGATGCGTTTACGTCCGATCCTGATGACCTCGCTGGCGTTTACGTCCGATCCTGATGACCTCGCTGGC                                         <  1:1199426/68‑1                                 GATGCGTTTACGTCCGATCCTGATGACCTCGCTGGCGTTTACGTCCGATCCTGATGACCTCGCTGGCG                                        <  1:1003278/68‑1                                 GATGCGTTTACGTCCGATCCTGATGACCTCGCTGGCGTTTACGTCCGATCCTGATGACCTCGCTGGCG                                        <  1:1816030/68‑1                                 GATGCGTTTACGTCCGATCCTGATGACCTCGCTGGCGTTTACGTCCGATCCTGATGACCTCGCTGGCG                                        <  1:3520047/68‑1                                   TGCGTTTACGTCCGATCCTGATGACCTCGCTGGCGTTTACGTCCGATCCTGATGACCTCGCTGGCGTT                                      >  1:390542/1‑68                                      GTTTACGTCCGATCCTGATGACCTCGCTGGCGTTTACGTCCGATCCTGATGACCTCGCTGGCGTTTAT                                   <  1:2062281/68‑1                                       TTTACGTCCGATCCTGATAACCTCGCTGGCGTTTACGTCCGATCCTGATGACCTCGCTGGCGTTTATC                                  <  1:3559335/68‑1                                             TCCGATCCTGATGACCTCGCTGGCGTTTACGTCCGATCCTGATGACCTCGCTGGCGTTTATCCTCGGC                            <  1:581574/68‑1                                                          ACCTCGCTGGCGTTTACGTCCGATCCTGATGACCTCGCTGGCGTTTATCCTCGGCGTTATGCCGCTGG               <  1:2336270/68‑1                                                          ACCTCGCTGGCGTTTACGTCCGATCCTGATGACCTCGCTGGCGTTTATCCTCGGCGTTATGCCGCTGG               >  1:2318847/1‑68                                                           CCTCGCTGGCGTTTACGTCCGATCCTGATGACCTCGCTGGCGTTTATCCTCGGCGTTATGCCGCTGGT              >  1:2722578/1‑68                                                           CCTCGCTGGCGTTTACGTCCGATCCTGATGACCTCGCTGGCGTTTATCCTCGGCGTTATGCCGCTGGT              <  1:4059301/68‑1                                                             TCGCTGGCGTTTACGTCCGATCCTGATGACCTCGCTGGCGTTTATCCTCGGCGTTATGCCGCTGGTTA            <  1:2048975/68‑1                                                             TCGCTGGCGTTTACGTCCGATCCTGATGACCTCGCTGGCGTTTATCCTCGGCGTTATGCCGCTGGTTA            <  1:2007640/68‑1                                                                  gtCGTTTACGTCCGATCCTGATGACCTCGCTGGCGTTTATCCTCGGCGTTATGCCGCTGGTTATCAGT       <  1:3542822/66‑1                                                                  cagGTTTACGTCCGATCCTGATGACCTCGCTGGCGTTTATCCTCGGCGTTATGCCGCTGGTTATCAGT       <  1:711000/65‑1                                                                  GGCGTTTACGTCCGATCCTGATGACCTCGCTGGCGTTTATCCTCGGCGTTATGCCGCTGGTTATCAGT       <  1:2814067/68‑1                                                                  GGCGTTTACGTCCGATCCTGATGACCTCGCTGGCGTTTATCCTCGGCGTTATGCCGCTGGTTATCAGT       <  1:2523169/68‑1                                                                       tgACGTCCGATCCTGATGACCTCGCTGGCGTTTATCCTCGGCGTTATGCCGCTGGTTATCAGTACTGG  <  1:2343956/66‑1                                                                                                                                            GGTCTGATTGAAGCGACGCTTGATGCGGTGCGGATGCGTTTACGTCCGATCCTGATGACCTCGCTGGCGTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/481529‑481457 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgtttaCGTCCGATCCTGATGACCTCGCTGGCGTTTATCCTCGGCGTTATGCCGCTGGTTATCAGTACTGG  <  NC_000913/481487‑481423

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.