| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 481457 = | 24 (0.450) | 26 (0.540) | 20/120 | 0.4 | 55.0% | coding (2947/3150 nt) | acrB | multidrug efflux pump RND permease AcrB |
| ? | NC_000913 | = 481487 | 21 (0.440) | coding (2917/3150 nt) | acrB | multidrug efflux pump RND permease AcrB | |||||
GTACCTACTGCGTTCTGCGCGCCGGAACCAGCACCAGTACTGATAACCAGCGGCATAACGCCGAGGATAAACGCCAGCGAGGTCATCAGGATCGGACGTAAACGCATCCGCACCGCATCAAGCGTCGCTTCAAT > NC_000913/481390‑481523 | gTACCTACTGCGTTCTGCGCGCCGGAACCAGCACCAGTACTGATAACCAGCGGCATAACGCCGAGGAt < 1:3618927/68‑1 (MQ=255) ccagtactgataaccagcggcataacgccgaggataaacgccagcgaggtcatcaggatcggacgtca < 1:2343956‑M1/3‑3 (MQ=255) aCCTACTGCGTTCTGCGCGCCGGAACCAGCACCAGTACTGATAACCAGCGGCATAACGCCGAGGATaa > 1:137684/1‑68 (MQ=255) aCCTACTGCGTTCTGCGCGCCGGAACCAGCACCAGTACTGATAACCAGCGGCATAACGCCGAGGATaa > 1:1816942/1‑68 (MQ=255) aCCTACTGCGTTCTGCGCGCCGGAACCAGCACCAGTACTGATAACCAGCGGCATAACGCCGAGGACaa > 1:126683/1‑68 (MQ=255) aCCTACTGCGTTCTGCGCGCCGGAACCAGCACCACTACTGATAACCAGCGGCATAACGCCGAGGATaa > 1:3212377/1‑68 (MQ=255) cTACTGCGTTCTGCGCGCCGGAGCCAGCACCAGTACTGATAACCAGCGGCATAACGCCGAGGATAAAc > 1:2776185/1‑68 (MQ=255) aCTGCGTTCTGCGCGCCGGAACCAGCACCAGTACTGATAACCAGCGGCATAACGCCGAGGATAAACGc > 1:1921815/1‑68 (MQ=255) actgataaccagcggcataacgccgaggataaacgccagcgaggtcatcaggatcggacgTaaacctg < 1:711000‑M1/8‑4 (MQ=255) actgataaccagcggcataacgccgaggataaacgccagcgaggtcatcaggatcggacgTAAacgac < 1:3542822‑M1/8‑3 (MQ=255) actgataaccagcggcataacgccgaggataaacgccagcgaggtcatcaggatcggacgTAAACGcc < 1:2814067‑M1/8‑1 (MQ=255) actgataaccagcggcataacgccgaggataaacgccagcgaggtcatcaggatcggacgTAAACGcc < 1:2523169‑M1/8‑1 (MQ=255) tGCGTTCTGCGCGCCGGAACCAGCACCAGTACTGATAACCAGCGGCATAACGCCGAGGATAAACGCCa > 1:2115805/1‑68 (MQ=255) tGCGTTCTGCGCGCCGGAACCAGCACCAGTACTGATAACCAGCGGCATAACGCCGAGGATAAACGCCa > 1:3876986/1‑68 (MQ=255) gTTCTGCGCGCCGGAACCAGCACCAGTACTGATAACCAGCGGCATAACGCCGAGGATAAACGCCAGCg > 1:2116302/1‑68 (MQ=255) taaccagcggcataacgccgaggataaacgccagcgaggtcatcaggatcggacgTAAACGCCAGCGa < 1:2048975‑M1/13‑1 (MQ=255) taaccagcggcataacgccgaggataaacgccagcgaggtcatcaggatcggacgTAAACGCCAGCGa < 1:2007640‑M1/13‑1 (MQ=255) tCTGCGCGCCGGAACCAGCACCAGTACTGATAACCAGCGGCATAACGCCGCGGATAAACGCCAGCGAg > 1:165443/1‑68 (MQ=255) tCTGCGCGCCGGAACCAGCACCAGTACTGATAACCAGCGGCATAACGCCGAGGATAAACGCCAGCGAg > 1:486961/1‑68 (MQ=255) accagcggcataacgccgaggataaacgccagcgaggtcatcaggatcggacgTAAACGCCAGCGAgg > 1:2722578‑M1/54‑68 (MQ=255) accagcggcataacgccgaggataaacgccagcgaggtcatcaggatcggacgTAAACGCCAGCGAgg < 1:4059301‑M1/15‑1 (MQ=255) tGCGCGCCGGAACCAGCACCAGTACTGATAACCAGCGGCATAACGCCGAGGATAAACGCCAGCGAGGt < 1:224068/68‑1 (MQ=255) tGCGCGCCGGAACCAGCACCAGTACTGATAACCAGCGGCATAACGCCGAGGATAAACGCCAGCGAGGt < 1:2849584/68‑1 (MQ=255) ccagcggcataacgccgaggataaacgccagcgaggtcatcaggatcggacgTAAACGCCAGCGAGGt > 1:2318847‑M1/53‑68 (MQ=255) ccagcggcataacgccgaggataaacgccagcgaggtcatcaggatcggacgTAAACGCCAGCGAGGt < 1:2336270‑M1/16‑1 (MQ=255) ccGGAACCAGCGCCAGTACTGATAACCAGCGGCATAACGCCGAGGATAAACGCCAGCGAGGTCATCAg < 1:3799796/68‑1 (MQ=255) aCCAGCACCAGTACTGATAACCAGCGGCATAACGCCGAGGATAAACGCCAGCGAGGTCATCAGGATCg > 1:2045838/1‑68 (MQ=255) aCCAGCACCAGTACTGATAACCAGCGGCATAACGCCGAGGATAAACGCCAGCGAGGCACTCAGGATCg > 1:591121/1‑68 (MQ=25) ccAGCACCAGTACTGATAACCAGCGGCATAACGCCGAGGATAAACGCCAGCGAGGTCATCAGGATCgg < 1:4058092/68‑1 (MQ=255) gccgaggataaacgccagcgaggtcatcaggatcggacgTAAACGCCAGCGAGGTCATCAGGATCGGa < 1:581574‑M1/29‑1 (MQ=255) cAGCACCAGTACTGATAACCAGCGGCATAACGCCGAGGATAAACGCCAGCGAGGTCATCAGGATCGGa > 1:1425861/1‑68 (MQ=255) cAGCACCAGTACTGATAACCAGCGGCATAACGCCGAGGATAAACGCCAGCGAGGTCATCAGGATCGGa > 1:3783560/1‑68 (MQ=255) ccAGTACTGATAACCAGCGGCATAACGCCGAGGATAAACGCCAGCGAGGTCATCAGGATCGGACGtca < 1:2343956‑M2/68‑4 (MQ=255) gataaacgccagcgaggtcatcaggatcggacgTAAACGCCAGCGAGGTTATCAGGATCGGACGTaaa < 1:3559335‑M1/35‑1 (MQ=255) ataaacgccagcgaggtcatcaggatcggacgTAAACGCCAGCGAGGTCATCAGGATCGGACGTAAAc < 1:2062281‑M1/36‑1 (MQ=255) aacgccagcgaggtcatcaggatcggacgTAAACGCCAGCGAGGTCATCAGGATCGGACGTAAACGCa > 1:390542‑M1/30‑68 (MQ=255) aCTGATAACCAGCGGCATAACGCCGAGGATAAACGCCAGCGAGGTCATCAGGATCGGACGtaaacgcc < 1:2523169‑M2/68‑9 (MQ=255) aCTGATAACCAGCGGCATAACGCCGAGGATAAACGCCAGCGAGGTCATCAGGATCGGACGtaaacgcc < 1:2814067‑M2/68‑9 (MQ=255) aCTGATAACCAGCGGCATAACGCCGAGGATAAACGCCAGCGAGGTCATCAGGATCGGACGtaaacgac < 1:3542822‑M2/68‑9 (MQ=255) aCTGATAACCAGCGGCATAACGCCGAGGATAAACGCCAGCGAGGTCATCAGGATCGGACGtaaacctg < 1:711000‑M2/68‑9 (MQ=255) cgccagcgaggtcatcaggatcggacgTAAACGCCAGCGAGGTCATCAGGATCGGACGTAAACGCATc < 1:1816030‑M1/41‑1 (MQ=255) cgccagcgaggtcatcaggatcggacgTAAACGCCAGCGAGGTCATCAGGATCGGACGTAAACGCATc < 1:3520047‑M1/41‑1 (MQ=255) cgccagcgaggtcatcaggatcggacgTAAACGCCAGCGAGGTCATCAGGATCGGACGTAAACGCATc < 1:1003278‑M1/41‑1 (MQ=255) gccagcgaggtcatcaggatcggacgTAAACGCCAGCGAGGTCATCAGGATCGGACGTAAACGCATcc < 1:1199426‑M1/42‑1 (MQ=255) tAACCAGCGGCATAACGCCGAGGATAAACGCCAGCGAGGTCATCAGGATCGGACGtaaacgccagcga < 1:2048975‑M2/68‑14 (MQ=255) tAACCAGCGGCATAACGCCGAGGATAAACGCCAGCGAGGTCATCAGGATCGGACGtaaacgccagcga < 1:2007640‑M2/68‑14 (MQ=255) tAACCAGCGGCATAACGCCGAGGATAAACGCCAGCGAGGTCATCAGGATCGGACGTAAACGCATccgc < 1:1024049/68‑1 (MQ=255) aCCAGCGGCATAACGCCGAGGATAAACGCCAGCGAGGTCATCAGGATCGGACGtaaacgccagcgagg > 1:2722578‑M2/1‑53 (MQ=255) aCCAGCGGCATAACGCCGAGGATAAACGCCAGCGAGGTCATCAGGATCGGACGtaaacgccagcgagg < 1:4059301‑M2/68‑16 (MQ=255) cgaggtcatcaggatcggacgTAAACGCCAGCGAGGTCATCAGGATCGGACGTAAACGCATccgcacc < 1:2649491‑M1/47‑1 (MQ=255) ccAGCGGCATAACGCCGAGGATAAACGCCAGCGAGGTCATCAGGATCGGACGtaaacgccagcgaggt < 1:2336270‑M2/68‑17 (MQ=255) ccAGCGGCATAACGCCGAGGATAAACGCCAGCGAGGTCATCAGGATCGGACGtaaacgccagcgaggt > 1:2318847‑M2/1‑52 (MQ=255) gaggtcatcaggatcggacgTAAACGCCAGCGAGGTCATCAGGATCGGACGTAAACGCATccgcaccg < 1:678742‑M1/48‑1 (MQ=255) aGCGGCATAACGCCGAGGATAAACGCCAGCGAGGTCATCAGGATCGGACGTAAACGCATccgcaccgc < 1:3897302/68‑1 (MQ=255) tcaggatcggacgTAAACGCCAGCGAGGTCATCAGGATCGGACGTAAACGCATCCGCACCGCATCAAg < 1:2395855‑M1/55‑1 (MQ=255) ggatcggacgTAAACGCCAGCGAGGTCATCAGGATCGGACGTAAACGCATCCGCACCGCATCAAGCGt < 1:244318‑M1/58‑1 (MQ=255) aCGCCGAGGATAAACGCCAGCGAGGTCATCAGGATCGGACGTAAACGCATCCGCACCGCATCAAGCGt > 1:2682701/1‑68 (MQ=255) gCCGAGGATAAACGCCAGCGAGGTCATCAGGATCGGACGtaaacgccagcgaggtcatcaggatcgga < 1:581574‑M2/68‑30 (MQ=255) atcggacgTAAACGCCAGCGAGGTCATCAGGATCGGACGTAAACGCATCCGCACCGCATCAAGCGTCg < 1:3009224‑M1/60‑1 (MQ=255) atcggacgTAAACGCCAGCGAGGTCATCAGGATCGGACGTAAACGCATCCGCACCCCATCAAGCGTCg < 1:488127‑M1/60‑1 (MQ=255) tcggacgTAAACGCCGCCGAGGTCATCAGGATCGGACGTAAACGCATCCGCACCGCATCAAGCGTCGc > 1:3229658‑M1/8‑68 (MQ=255) tcggacgTAAACGCCAGCGAGGTCATCAGGATCGGACGTAAACGCATCCGCACCGCATCAAGCGTCGc > 1:3881727‑M1/8‑68 (MQ=255) acgTAAACGCCAGCGAGGTCATCAGGATCGGACGTAAACGCATCCGCACCGCATCAAGCGTCGCTTCa < 1:1225134‑M1/65‑1 (MQ=255) gATAAACGCCAGCGAGGTCATCAGGATCGGACGtaaacgccagcgaggttatcaggatcggacgtaaa < 1:3559335‑M2/68‑36 (MQ=255) cgTAAACGCCAGCGAGGTCATCAGGATCGGACGTAAACGCATCCGCACCGCATCAAGCGTCGCTTCaa > 1:1651428‑M1/3‑68 (MQ=255) aTAAACGCCAGCGAGGTCATCAGGATCGGACGtaaacgccagcgaggtcatcaggatcggacgtaaac < 1:2062281‑M2/68‑37 (MQ=255) aTAAACGCCAGCGAGGTCATCAGGATCGGACGTAAACGCATCCGCACCGCATCAAGCGTCGCTTCAAt > 1:3508354/1‑68 (MQ=255) | GTACCTACTGCGTTCTGCGCGCCGGAACCAGCACCAGTACTGATAACCAGCGGCATAACGCCGAGGATAAACGCCAGCGAGGTCATCAGGATCGGACGTAAACGCATCCGCACCGCATCAAGCGTCGCTTCAAT > NC_000913/481390‑481523 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |