| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 481457 = | 24 (0.450) | 26 (0.540) | 20/120 | 0.4 | 55.0% | coding (2947/3150 nt) | acrB | multidrug efflux pump RND permease AcrB |
| ? | NC_000913 | = 481487 | 21 (0.440) | coding (2917/3150 nt) | acrB | multidrug efflux pump RND permease AcrB | |||||
CCAGTACTGATAACCAGCGGCATAACGCCGAGGATAAACGCCAGCGAGGTCATCAGGATCGGACGTAAACGCATCCGCACCGCATCAAGCGTCGCTTCAATCAGACCTTTACCTTCTTTATCCATCAAGTC > NC_000913/481423‑481553 | ccAGTACTGATAACCAGCGGCATAACGCCGAGGATAAACGCCAGCGAGGTCATCAGGATCGGACGtca < 1:2343956‑M2/68‑4 (MQ=255) gataaacgccagcgaggtcatcaggatcggacgTAAACGCCAGCGAGGTTATCAGGATCGGACGTaaa < 1:3559335‑M1/35‑1 (MQ=255) ataaacgccagcgaggtcatcaggatcggacgTAAACGCCAGCGAGGTCATCAGGATCGGACGTAAAc < 1:2062281‑M1/36‑1 (MQ=255) aacgccagcgaggtcatcaggatcggacgTAAACGCCAGCGAGGTCATCAGGATCGGACGTAAACGCa > 1:390542‑M1/30‑68 (MQ=255) aCTGATAACCAGCGGCATAACGCCGAGGATAAACGCCAGCGAGGTCATCAGGATCGGACGtaaacgcc < 1:2523169‑M2/68‑9 (MQ=255) aCTGATAACCAGCGGCATAACGCCGAGGATAAACGCCAGCGAGGTCATCAGGATCGGACGtaaacgcc < 1:2814067‑M2/68‑9 (MQ=255) aCTGATAACCAGCGGCATAACGCCGAGGATAAACGCCAGCGAGGTCATCAGGATCGGACGtaaacgac < 1:3542822‑M2/68‑9 (MQ=255) aCTGATAACCAGCGGCATAACGCCGAGGATAAACGCCAGCGAGGTCATCAGGATCGGACGtaaacctg < 1:711000‑M2/68‑9 (MQ=255) cgccagcgaggtcatcaggatcggacgTAAACGCCAGCGAGGTCATCAGGATCGGACGTAAACGCATc < 1:1003278‑M1/41‑1 (MQ=255) cgccagcgaggtcatcaggatcggacgTAAACGCCAGCGAGGTCATCAGGATCGGACGTAAACGCATc < 1:3520047‑M1/41‑1 (MQ=255) cgccagcgaggtcatcaggatcggacgTAAACGCCAGCGAGGTCATCAGGATCGGACGTAAACGCATc < 1:1816030‑M1/41‑1 (MQ=255) gccagcgaggtcatcaggatcggacgTAAACGCCAGCGAGGTCATCAGGATCGGACGTAAACGCATcc < 1:1199426‑M1/42‑1 (MQ=255) tAACCAGCGGCATAACGCCGAGGATAAACGCCAGCGAGGTCATCAGGATCGGACGtaaacgccagcga < 1:2007640‑M2/68‑14 (MQ=255) tAACCAGCGGCATAACGCCGAGGATAAACGCCAGCGAGGTCATCAGGATCGGACGtaaacgccagcga < 1:2048975‑M2/68‑14 (MQ=255) tAACCAGCGGCATAACGCCGAGGATAAACGCCAGCGAGGTCATCAGGATCGGACGTAAACGCATccgc < 1:1024049/68‑1 (MQ=255) aCCAGCGGCATAACGCCGAGGATAAACGCCAGCGAGGTCATCAGGATCGGACGtaaacgccagcgagg > 1:2722578‑M2/1‑53 (MQ=255) aCCAGCGGCATAACGCCGAGGATAAACGCCAGCGAGGTCATCAGGATCGGACGtaaacgccagcgagg < 1:4059301‑M2/68‑16 (MQ=255) cgaggtcatcaggatcggacgTAAACGCCAGCGAGGTCATCAGGATCGGACGTAAACGCATccgcacc < 1:2649491‑M1/47‑1 (MQ=255) ccAGCGGCATAACGCCGAGGATAAACGCCAGCGAGGTCATCAGGATCGGACGtaaacgccagcgaggt < 1:2336270‑M2/68‑17 (MQ=255) ccAGCGGCATAACGCCGAGGATAAACGCCAGCGAGGTCATCAGGATCGGACGtaaacgccagcgaggt > 1:2318847‑M2/1‑52 (MQ=255) gaggtcatcaggatcggacgTAAACGCCAGCGAGGTCATCAGGATCGGACGTAAACGCATccgcaccg < 1:678742‑M1/48‑1 (MQ=255) aGCGGCATAACGCCGAGGATAAACGCCAGCGAGGTCATCAGGATCGGACGTAAACGCATccgcaccgc < 1:3897302/68‑1 (MQ=255) tcaggatcggacgTAAACGCCAGCGAGGTCATCAGGATCGGACGTAAACGCATCCGCACCGCATCAAg < 1:2395855‑M1/55‑1 (MQ=255) ggatcggacgTAAACGCCAGCGAGGTCATCAGGATCGGACGTAAACGCATCCGCACCGCATCAAGCGt < 1:244318‑M1/58‑1 (MQ=255) aCGCCGAGGATAAACGCCAGCGAGGTCATCAGGATCGGACGTAAACGCATCCGCACCGCATCAAGCGt > 1:2682701/1‑68 (MQ=255) gCCGAGGATAAACGCCAGCGAGGTCATCAGGATCGGACGtaaacgccagcgaggtcatcaggatcgga < 1:581574‑M2/68‑30 (MQ=255) atcggacgTAAACGCCAGCGAGGTCATCAGGATCGGACGTAAACGCATCCGCACCGCATCAAGCGTCg < 1:3009224‑M1/60‑1 (MQ=255) atcggacgTAAACGCCAGCGAGGTCATCAGGATCGGACGTAAACGCATCCGCACCCCATCAAGCGTCg < 1:488127‑M1/60‑1 (MQ=255) tcggacgTAAACGCCGCCGAGGTCATCAGGATCGGACGTAAACGCATCCGCACCGCATCAAGCGTCGc > 1:3229658‑M1/8‑68 (MQ=255) tcggacgTAAACGCCAGCGAGGTCATCAGGATCGGACGTAAACGCATCCGCACCGCATCAAGCGTCGc > 1:3881727‑M1/8‑68 (MQ=255) acgTAAACGCCAGCGAGGTCATCAGGATCGGACGTAAACGCATCCGCACCGCATCAAGCGTCGCTTCa < 1:1225134‑M1/65‑1 (MQ=255) gATAAACGCCAGCGAGGTCATCAGGATCGGACGtaaacgccagcgaggttatcaggatcggacgtaaa < 1:3559335‑M2/68‑36 (MQ=255) cgTAAACGCCAGCGAGGTCATCAGGATCGGACGTAAACGCATCCGCACCGCATCAAGCGTCGCTTCaa > 1:1651428‑M1/3‑68 (MQ=255) aTAAACGCCAGCGAGGTCATCAGGATCGGACGtaaacgccagcgaggtcatcaggatcggacgtaaac < 1:2062281‑M2/68‑37 (MQ=255) aTAAACGCCAGCGAGGTCATCAGGATCGGACGTAAACGCATCCGCACCGCATCAAGCGTCGCTTCAAt > 1:3508354/1‑68 (MQ=255) aaCGCCAGCGAGGTCATCAGGATCGGACGtaaacgccagcgaggtcatcaggatcggacgtaaacgca > 1:390542‑M2/1‑29 (MQ=255) ACGCCCGCGAGGTCATCAGGATCGGACGTAAACGCATCCGCACCGCATCAAGCGTCGCTTCAATCAGa > 1:908323‑M1/1‑68 (MQ=255) ACGCCAGCGAGGTCATCAGGATCGGACGTAAACGCATCCGCACCGCATCAAGCGTCGCTTCAATCAGa < 1:4122562‑M1/68‑1 (MQ=255) ACGCCAGCGAGGTCATCAGGATCGGACGTAAACGCATCCGCACCGCATCAAGCGTCGCTTCAATCAGa > 1:1129427‑M1/1‑68 (MQ=255) ACGCCAGCGAGGTCATCAGGATCGGACGTAAACGCATCCGCACCGCATCAAGCGTCGCTTCAATCAGa < 1:694516‑M1/68‑1 (MQ=255) cGCCAGCGAGGTCATCAGGATCGGACGtaaacgccagcgaggtcatcaggatcggacgtaaacgcatc < 1:1003278‑M2/68‑42 (MQ=255) cGCCAGCGAGGTCATCAGGATCGGACGtaaacgccagcgaggtcatcaggatcggacgtaaacgcatc < 1:1816030‑M2/68‑42 (MQ=255) cGCCAGCGAGGTCATCAGGATCGGACGtaaacgccagcgaggtcatcaggatcggacgtaaacgcatc < 1:3520047‑M2/68‑42 (MQ=255) gCCAGCGAGGTCATCAGGATCGGACGtaaacgccagcgaggtcatcaggatcggacgtaaacgcatcc < 1:1199426‑M2/68‑43 (MQ=255) GCCAGCGAGGTCATCAGGATCGGACGTAAACGCATCCGCACCGCATCAAGCGTCGCTTCAATCAGAcc > 1:821880‑M1/1‑68 (MQ=255) cAGCGAGTTCATCAGGATCGGACGTAAACGCATCCGCACCGCATCAAGCGTCGCTTCAATCAGACCtt < 1:1926592/68‑1 (MQ=255) cAGCGAGGTCATCAGGATCGGGCGTAAACGCATCCGCACCGCATCAAGCGTCGCTTCAATCAGACCtt < 1:1205579/68‑1 (MQ=255) aGCGAGGTCATCAGGATCGGACGTAAACGCATCCGCACCGCATCAAGCGTCGCTTCAATCAGACCttt > 1:553284/1‑68 (MQ=255) cGAGGTCATCAGGATCGGACGtaaacgccagcgaggtcatcaggatcggacgtaaacgcatccgcacc < 1:2649491‑M2/68‑48 (MQ=255) gAGGTCATCAGGATCGGACGtaaacgccagcgaggtcatcaggatcggacgtaaacgcatccgcaccg < 1:678742‑M2/68‑49 (MQ=255) gAGGTCATCAGGATCGGACGTAAACGCATCCGCACCGCATCAAGCGTCGCTTCAATCAGACCTTTAcc > 1:3562714/1‑68 (MQ=255) ggTCATCAGGATCGGACGTAAACGCATCCGCACCGCATCAACCGTCGCTTCAATCAGACCTTTACctt > 1:486142/1‑68 (MQ=255) gTCATCAGGATCGGACGTAAACGCATCCGCACCGCATCAAGCGTCGCTTCAATCAGACCTTTACcttc < 1:1976873/68‑1 (MQ=255) gTCATCAGGATCGGACGTAAACGCATCCGCACCGCATCAAGCGTCGCTTCAATCAGACCTTTACcttc < 1:1721654/68‑1 (MQ=255) gTCATCAGGATCGGACGTAAACGCATCCGCACCGCATCAAGCGTCGCTTCAATCAGACCTTTACcttc < 1:1367379/68‑1 (MQ=255) tcaGGATCGGACGtaaacgccagcgaggtcatcaggatcggacgtaaacgcatccgcaccgcatcaag < 1:2395855‑M2/68‑56 (MQ=255) ggATCGGCCGTAAACGCATCCGCACCGCATCAAGCGTCGCTTCAATCAGACCTTTACCTTCTTTATcc > 1:3027005/1‑68 (MQ=255) ggATCGGACGtaaacgccagcgaggtcatcaggatcggacgtaaacgcatccgcaccgcatcaagcgt < 1:244318‑M2/68‑59 (MQ=255) ggATCGGACGTAAACGCATCCGCACCGCATCAAGCGTCGCTTCAATCAGACCTTTACCTTCTTTATcc > 1:1176531/1‑68 (MQ=255) gATCGGACGTAAACGCATCCGCACCGCATCAAGCGTGGCTGCAATCAGACCTTTACCTTCTTTATCCa < 1:4062757/68‑1 (MQ=255) aTCGGACGtaaacgccagcgaggtcatcaggatcggacgtaaacgcatccgcaccgcatcaagcgtcg < 1:3009224‑M2/68‑61 (MQ=255) aTCGGACGtaaacgccagcgaggtcatcaggatcggacgtaaacgcatccgcaccccatcaagcgtcg < 1:488127‑M2/68‑61 (MQ=255) aTCGGACGTAAACGCATCCGCACCGCATCAAGCGTCGCTTCAATCAGACCTTTACCTTCTTTATCCAt > 1:1444830/1‑68 (MQ=255) aTCGGACGTAAACGCATCCGCACCGCATCAAGCGTCGCTTCAATCAGACCTTTACCTTCTTTATCCAt > 1:2984422/1‑68 (MQ=255) tCGGACGtaaacgccgccgaggtcatcaggatcggacgtaaacgcatccgcaccgcatcaagcgtcgc > 1:3229658‑M2/1‑7 (MQ=255) tCGGACGtaaacgccagcgaggtcatcaggatcggacgtaaacgcatccgcaccgcatcaagcgtcgc > 1:3881727‑M2/1‑7 (MQ=255) cGGACGTAAACGCATCCGCACCGCATCAAGCGTCGCTTCAATCAGACCTTTACCTTCTTTATCCATCa > 1:1944920/1‑68 (MQ=255) cGGACGTAAACGCATCCGCACCGCATCAAGCGTCGCTTCAATCAGACCTTTACCTTCTTTATCCATCa > 1:2006701/1‑68 (MQ=255) aCGtaaacgccagcgaggtcatcaggatcggacgtaaacgcatccgcaccgcatcaagcgtcgcttca < 1:1225134‑M2/68‑66 (MQ=255) aCGTAAACGCATCCGCACCGCATCAAGCGTCGCTTCAATCAGACCTTTACCTTCTTTATCCATCAAGt > 1:3999110/1‑68 (MQ=255) cGtaaacgccagcgaggtcatcaggatcggacgtaaacgcatccgcaccgcatcaagcgtcgcttcaa > 1:1651428‑M2/1‑2 (MQ=255) cGTAAACGCATCCGCACCGCATCAAGCGTCGCTTCAATCAGACCTTTACCTTCTTTATCCATCAAGTc > 1:1170607/1‑68 (MQ=255) | CCAGTACTGATAACCAGCGGCATAACGCCGAGGATAAACGCCAGCGAGGTCATCAGGATCGGACGTAAACGCATCCGCACCGCATCAAGCGTCGCTTCAATCAGACCTTTACCTTCTTTATCCATCAAGTC > NC_000913/481423‑481553 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |