| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 39579 = | 45 (0.910) | 427 (8.650) | 59/128 | 0.0 | 89.0% | coding (808/1143 nt) | caiA | crotonobetainyl‑CoA reductase |
| ? | NC_000913 | = 55230 | 61 (1.240) | coding (1880/2355 nt) | lptD | lipopolysaccharide assembly protein LptD | |||||
Only 100 of 427 total aligned reads displayed.
TACGGTACGGCGATGTGCGCCTTTGAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/39642‑39579‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTACGATACACGTCTGGATAACGTAGCGACCAGTAACTCCAGCATTGAATACCGTCGGGATGA < NC_000913/55230‑55167 TACGGTACGGCGGTGTGCGCCTTTGAAGATGCGGCGCGCTACGGCAATCAGCGCGTGCAGTTTGA < 1:3812570/65‑1TACGGTACGGCGATGTGCGCCTTTGAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGA < 1:242351/65‑1TACGGTACGGCGATGTGCGCCTTTGAAGATGCGGCGCGCTACGCCAATCAGCGCGCGCAGTTTGA > 1:130112/1‑65 CGGTACGGCGATGTGCGCCTTTGAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGT < 1:2273067/65‑1 acaGGCGATGTGCGCCTTTGAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACG < 1:2019371/62‑1 TACGGCGATGTGCGCCTTTGAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACG < 1:511815/65‑1 CGGCGATGTGCGCCTTTGAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGAT < 1:1875681/65‑1 CGGCGATGTGCGCCTTTGAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGAT < 1:684927/65‑1 CGGCGATGTGCGCCTTTGAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGAT < 1:1085843/65‑1 CGGCGATGTGCGCCTTTGAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGAT < 1:3655930/65‑1 CGGCGATGTGCGCCTTTGAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGAT < 1:3141978/65‑1 CGGCGATGTGCGCCTTTGAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGAT < 1:2204150/65‑1 CGGCGATGTGCGCCTTTGAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGAT < 1:3500170/65‑1 CGGCGATGTGCGCCTTTGAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGAT < 1:668468/65‑1 CGGCGATGTGCGCCTTTGAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGAT < 1:480742/65‑1 GCGATGTGCGCGTTTGAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGATAC > 1:3695746/1‑65 GCGATGTGCGCCTTTGAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGATAC > 1:3826845/1‑65 GATGTGCGCCTTTGAAGATGCGGCGCGCTATGCCAATCAGCGCGTGCAGTTTGAGTACGATACAC > 1:1644369/1‑65 GATGTGCGCCTTTGAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGATACAC > 1:3573850/1‑65 GATGTGCGCCTTTGAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGATACAC > 1:2972996/1‑65 GATGTGCGCCTTTGAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGATACAC > 1:2402695/1‑65 GATGTGCGCCTTTGAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGATACAC > 1:394349/1‑65 GATGTGCGCCTTTGAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGATACAC > 1:1176102/1‑65 GATGTGCGCCTTTGAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGATAAAC > 1:2816500/1‑65 GATGTGCGCCTTTGAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTCTTAGTACGATAgca > 1:3719734/1‑62 ATGTGCGGCTTTGAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGATACACG < 1:915182/65‑1 ATGTGCGCCTTTGAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGATACACG < 1:3873056/65‑1 ATGTGCGCCTTTGAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGATACACG < 1:603471/65‑1 ATGTGCGCCTTTGAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGATACACG < 1:1979014/65‑1 ATGTGCGCCTTTGAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGATACACG < 1:1133925/65‑1 ATGTGCGCCTTTGAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGATACACG < 1:742391/65‑1 ATGTGCGCCTTTGAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGATACACG < 1:1263941/65‑1 ATGTGCGCCTTTGAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGATACACG < 1:3351269/65‑1 ATGTGCGCCTTTGAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGATACACG < 1:1596206/65‑1 ATGTGCGCCTTTGAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGATACACG < 1:149611/65‑1 GTGCGCCTTTGAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGATACACGTC > 1:3380074/1‑65 TGCGCCTTTGAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGATACACGTCT < 1:1059977/65‑1 TGCGCCTTTGAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGATACACGTCT < 1:208046/65‑1 GCGCCTTTGAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGATACACGTCTG > 1:554174/1‑65 CGCGTTTGAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGATACACGTCTGG < 1:921944/65‑1 CGCCTTTGAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGATACACGTCTGG < 1:445800/65‑1 CGCCTTTGAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGATACACGTCTGG < 1:3441058/65‑1 CGCCTTTGAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGATACACGTCTGG < 1:2483877/65‑1 CGCCTTTGAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGATACACGTCTGG < 1:1911497/65‑1 CGCCTTTGAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGATACACGTCTGG < 1:2140206/65‑1 TTGAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGATACACGTCTGGATAAC < 1:3027000/65‑1 GAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGATACACGTCTGGATAACGT < 1:640242/65‑1 GAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGATACACGTCTGGATAACGT < 1:1747252/65‑1 GAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGATACACGTCTGGATAACGT < 1:2883321/65‑1 AGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGATACACGTCTGGATAACGTAG > 1:1696358/1‑65 AGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGATACACGTCTGGATAACGTAG > 1:1416061/1‑65 AGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGATACACGTCTGGATAACGTAG > 1:879430/1‑65 TGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGATACACGTCTGGATAACGTAGCGA > 1:2785300/1‑65 CGGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGATACACGTCTGGATAACGTAGCGACC < 1:2921638/65‑1 GGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGATACACGTCTGGATAACGTAGCGACCA < 1:139475/65‑1 GGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGATACACGTCTGGATAACGTAGCGACCA < 1:2387192/65‑1 GGCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGATACACGTCTGGATAACGTAGCGACCA < 1:1886792/65‑1 GGCGCGCTACGCCAATCAGCGCGTGCAGCTTGAGTACGATACACGTCTGGATAACGTAGCGACCA < 1:1211972/65‑1 GCGCGCTACGCCAATCAGCGCGTGCAGTTTGAGTACGATACACGTCTGGATAACGTAGCGACCAG < 1:2729188/65‑1 CTACGCCAATCAGCGCGTGCAGTTTGAGTACGATACACGTCTGGATAACGTAGCGACCAGTAACT < 1:3133970/65‑1 CTACGCCAATCAGCGCGTGCAGTTTGAGTACGATACACGTCTGGATAACGTAGCGACCAGTAACT < 1:3469123/65‑1 CTACGCCAATCAGCGCGTGCAGTTTGAGTACGATACACGTCTGGATAACGTAGCGACCAGTAACT < 1:2694257/65‑1 CTACGCCAATCAGCGCGTGCAGTTTGAGTACGATACACGTCTGGATAACGTAGCGACCAGTAACT < 1:3889892/65‑1 CTACGCCAATCAGCGCGTGCAGTTTGAGTACGATACACGTCTGGATAACGTAGCGACCAGTAACT < 1:255425/65‑1 CTACGCCAATCAGCGCGTGCAGTTTGAGTACGATACACGTCTGGATAACGTAGCGACCAGTAACT < 1:2174346/65‑1 CTACGCCAATCAGCGCGTGCAGTTTGAGTACGATACACGTCTGGATAACGTAGCGACCAGTAACT < 1:866007/65‑1 ACGCCAATCAGCGCGTGCAGTTTGAGTACGATACACGTCTGGATAACGTAGCGACCAGTAACTCC < 1:1001126/65‑1 CCAATCAGCGCGTGCAGTTTGAGTACGATACACGTCTGGATAACGTAGCGACCAGTAACTCCAGC < 1:2057897/65‑1 CCAATCAGCGCGTGCAGTTTGAGTACGATACACGTCTGGATAACGTAGCGACCAGTAACTCCAGC < 1:959007/65‑1 AATCAGCGCGTGCAGTTTGAGTACGATACCCGTCTGGATAACGTAGCGACCAGTAACTCCAGCAT < 1:1458058/65‑1 AATCAGCGCGTGCAGTTTGAGTACGATACACGTCTGGATAACGTAGCGACCAGTAACTCCAGCAT < 1:796549/65‑1 AATCAGCGCGTGCAGTTTGAGTACGATACACGTCTGGATAACGTAGCGACCAGTAACTCCAGCAT < 1:2638345/65‑1 AATCAGCGCGTGCAGTTTGAGTACGATACACGTCTGGATAACGTAGCGACCAGTAACTCCAGCAT < 1:3084837/65‑1 AATCAGCGCGTGCAGTTTGAGTACGATACACGTCTGGATAACGTAGCGACCAGTAACTCCAGCAT < 1:2303612/65‑1 TCAGCGCGTGCAGTTTGAGTACGATACACGTCTGGATAACGTAGCGACCAGTAACTCCAGCATTG > 1:2965710/1‑65 TCAGCGCGTGCAGTTTGAGTACGATACACGTCTGGATAACGTAGCGACCAGTAACTCCAGCATTG > 1:2583888/1‑65 CAGCGCGTGCAGTTTGAGTCCGATACACGTCTGGATAACGTAGCGACCAGTAACTCCAGCATTGA < 1:2839788/65‑1 CAGCGCGTGCAGTTTGAGTACGATACACGTCTGGATAACGTAGCGACCAGTAACTCCAGCATTGA < 1:16674/65‑1 CAGCGCGTGCAGTTTGAGTACGATACACGTCTGGATAACGTAGCGACCAGTAACTCCAGCATTGA < 1:3259424/65‑1 CAGCGCGTGCAGTTTGAGTACGATACACGTCTGGATAACGTAGCGACCAGTAACTCCAGCATTGA < 1:1790339/65‑1 CAGCGCGTGCAGTTTGAGTACGATACACGTCTGGATAACGTAGCGACCAGTAACTCCAGCATTGA < 1:184610/65‑1 CAGCGCGTGCAGTTTGAGTACGATACACGTCTGGATAACGTAGCGACCAGTAACTCCAGCATTGA < 1:2624320/65‑1 CAGCGCGTGCAGTTTGAGTACGATACACGTCTGGATAACGTAGCGACCAGTAACTCCAGCATTGA < 1:2539068/65‑1 CAGCGCGTGCAGTTTGAGTACGATACACGTCTGGATAACGTAGCGACCAGTAACTCCAGCATTGA < 1:2507772/65‑1 CAGCGCGTGCAGTTTGAGTACGATACACGTCTGGATAACGTAGCGACCAGTAACTCCAGCATTGA < 1:1284384/65‑1 AGCGCGTGCAGTTTGAGTACGATACACGTCTGGATAACGTAGCGACCAGTAACTCCAGCATTGAA > 1:1311794/1‑65 AGCGCGTGCAGTTTGAGTACGATACACGTCTGGATAACGTAGCGACCAGTAACTCCAGCATTGAA > 1:1526416/1‑65 AGCGCGTGCAGTTTGAGTACGATACACGTCTGGATAACGTAGCGACCAGTAACTCCAGCATTGAA > 1:2008718/1‑65 AGCGCGTGCAGTTTGAGTACGATACACGTCTGGATAACGTAGCGACCAGGAACTCCAGCATTGAA > 1:3531632/1‑65 GCGTGCAGTTTGAGTACGGTACACGTCTGGATAACGTAGCGACCAGTAACTCCAGCATTGAATAC < 1:1905208/65‑1 GCGTGCAGTTTGAGTACGATACACGTCTGGATAACGTAGCGACCAGTAACTCCAGCATTGAATAC > 1:3402420/1‑65 GCAGTTTGAGTACGATACACGTCTGGATAACGTAGCGACCAGTAACTCCAGCATTGAATACCGTC > 1:1938070/1‑65 CAGTTTGAGTACGATACACGTCTGGATAACGTAGCGACCAGTAACTCCAGCATTGAATACCGTCG > 1:2245109/1‑65 AGTTTGAGTACCATCCACGTCTGGATAACGTAGCGACCAGTAACTCCAGCATTGAATACCGTCGG < 1:3479740/65‑1 TTTGAGTACGATGCTCGTCTAGATAACGTAGCGACCAGTAACTCCAGCATTGAATACCGTCGGGA < 1:3205406/65‑1 TTTGAGTACGATACACGTCTGGATAACGTAGCGACCAGTAACTCCAGCATTGAATACCGTCGGGA < 1:1237564/65‑1 TTTGAGTACGATACACGTCTGGATAACGTAGCGACCAGTAACTCCAGCATTGAATACCGTCGGGA > 1:1034089/1‑65 TTTGAGTACGATACACGTCTGGATAACGTAGCGACCAGTAACTCCAGCATTGAATACCGTCGGGA > 1:2329734/1‑65 TTTGAGTACGATACACGTCTGGATAACGTAGCGACCAGTAACTCCAGCATTGAATACCGTCGGGA > 1:3780950/1‑65 GAGTACGATACACGTCTGGATAACGTAGCGACCAGTAACTCCAGCATTGAATACCGTCGGGATGA < 1:286125/65‑1 TACGGTACGGCGATGTGCGCCTTTGAAGATGCGGCGCGCTACGCCAATCAGCGCGTGCAGTTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/39642‑39579‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTACGATACACGTCTGGATAACGTAGCGACCAGTAACTCCAGCATTGAATACCGTCGGGATGA < NC_000913/55230‑55167 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |