| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 39579 = | 45 (0.910) | 427 (8.650) | 59/128 | 0.0 | 89.0% | coding (808/1143 nt) | caiA | crotonobetainyl‑CoA reductase |
| ? | NC_000913 | = 55230 | 61 (1.240) | coding (1880/2355 nt) | lptD | lipopolysaccharide assembly protein LptD | |||||
Only 100 of 499 total aligned reads displayed.
TTCATCCCGACGGTATTCAATGCTGGAGTTACTGGTCGCTACGTTATCCAGACGTGTATCGTACTGAATCCCGCCACGCAATCCCCAACGCTCGGAGATACGCCAGTAAGTATCGCCTGCCCACACCAG > NC_000913/55166‑55294 | ttCATCCCGACGGTATTCAATGCTGGAGTTACTGGTCGCTACGTTATCCAGACGTGTATCGTACt < 1:351265/65‑1 (MQ=255)ttCATCCCGACGGTATTCAATGCTGGAGTTACTGGTCGCTACGTTATCCAGACGTGTATCGTACt < 1:3252400/65‑1 (MQ=255) cATCCCGACGGTATTCAATGCTGGAGTTACTGGTCGCTACGTTATCCAGACGTGTATCGTACTGa < 1:2107128/65‑1 (MQ=255) tCCCGACGGTATTCAATGCTGGAGTTACTGGTCGCTACGTTATCTAGACGAGCATCGTACTcaaa < 1:3205406‑M2/65‑5 (MQ=255) tCCCGACGGTATTCAATGCTGGAGTTACTGGTCGCTACGTTATCCAGACGTGTATCGTACTcaaa > 1:3800494‑M2/1‑61 (MQ=255) tCCCGACGGTATTCAATGCTGGAGTTACTGGTCGCTACGTTATCCAGACGTGTATCGTACTcaaa < 1:1237564‑M2/65‑5 (MQ=255) gACGGTATTCAATGCTGGAGTTACTGGTCGCTACGTTATCCAGACGTGTATCGTACTcaaactgc > 1:1938070‑M2/1‑57 (MQ=255) gTATTCAATGCTGGAGTTACTGGTCGCTACGTTATCCAGACGTGTATCGTACTcaaactgcacgc > 1:1133355‑M2/1‑53 (MQ=255) gTATTCAATGCTGGAGTTACTGGGCGCTACGTTATCCAGACGTGTATCGTACTcaaactgcacgc > 1:1282240‑M2/1‑53 (MQ=255) tATTCAATGCTGGAGTTACTGGTCGCTACGTTATCCAGACGTGTATCGTACTcaaactgcacgcg > 1:3498799‑M2/1‑52 (MQ=255) tATTCAATGCTGGAGTTACTGGTCGCTACGTTATCCAGACGTGTATCGTACTcaaactgcacgcg > 1:2505513‑M2/1‑52 (MQ=255) ttCAATGCTGGAGTTACTGGTCGCTACGTTATCCAGACGTGTATCGTACTcaaactgcacgcgct > 1:906406‑M2/1‑50 (MQ=255) ttCAATGCTGGAGTTACTGGTCGCTACGTTATCCAGACGTGTATCGTACTcaaactgcacgcgct > 1:2812934‑M2/1‑50 (MQ=255) tCAATGCTGGAGTTACTGGTCGCTACGTTATCCAGACGTGTATCGTACTcaaactgcacgcgctg < 1:2624320‑M2/65‑17 (MQ=255) tCAATGCTGGAGTTACTGGTCGCTACGTTATCCAGACGTGTATCGTACTcaaactgcacgcgctg < 1:16674‑M2/65‑17 (MQ=255) tCAATGCTGGAGTTACTGGTCGCTACGTTATCCAGACGTGTATCGTACTcaaactgcacgcgctg < 1:2539068‑M2/65‑17 (MQ=255) cAATGCTGGAGTTACTGGTCGCTACGTTATCCAGACGTGTATCGTACTcaaactgcacgcgctga > 1:366357‑M2/1‑48 (MQ=255) cAATGCTGGAGTTACTGGTCGCTACGTTATCCAGACGTGTATCGTACTcaaactgcacgcgctga > 1:70550‑M2/1‑48 (MQ=255) cAATGCTGGAGTTACTGGTCGCTACGTTATCCAGACGTGTATCGTACTcaaactgcacgcgctga > 1:3756298‑M2/1‑48 (MQ=255) cAATGCTGGAGTTACTGGTCGCTACGTTATCCAGACGTGTATCGTACTcaaactgcacgcgctga > 1:3612056‑M2/1‑48 (MQ=255) cAATGCTGGAGTTACTGGTCGCTACGTTATCCAGACGTGTATCGTACTcaaactgcacgcgctga > 1:1710185‑M2/1‑48 (MQ=255) cAATGCTGGAGTTACTGGTCGCTACGTTATCCAGACGTGTATCGTACTcaaactgcacgcgctga > 1:2965710‑M2/1‑48 (MQ=255) cAATGCTGGAGTTACTGGTCGCTACGTTATCCAGACGTGTATCGTACTGAATCCCGCCACGCAAt < 1:445293/65‑1 (MQ=255) aTGCTGGAGTTACTGGTCGCTACGTTATCCAGACGTGTATCGTACTcaaactgcacgcgctgatt < 1:2826336‑M2/65‑20 (MQ=255) aTGCTGGAGTTACTGGTCGCTACGTTATCCAGACGTGTATCGTACTcaaactgcacgcgctgatt < 1:796549‑M2/65‑20 (MQ=255) aTGCTGGAGTTACTGGTCGCTACGTTATCCAGACGTGTATCGTACTcaaactgcacgcgctgatt > 1:1437981‑M2/1‑46 (MQ=255) aTGCTGGAGTTACTGGTCGCTACGTTATCCAGACGTGTATCGTACTcaaactgcacgcgctgatt < 1:877709‑M2/65‑20 (MQ=255) aTGCTGGAGTTACTGGTCGCTACGTTATCCAGACGTGTATCGTACTcaaactgcacgcgctgatt < 1:2638345‑M2/65‑20 (MQ=255) aTGCTGGAGTTACTGGTCGCTACGTTATCCAGACGTGTATCGTACTcaaactgcacgcgctgatt < 1:2303612‑M2/65‑20 (MQ=255) gCTGGAGTTACTGGTCGCTACGTTATCCAGACGTGTATCGTACTcaaactgcacgcgctgattgg < 1:3354877‑M2/65‑22 (MQ=255) gCTGGAGTTACTGGTCGCTACGTTATCCAGACGTGTATCGTACTcaaactgcacgcgctgattgg < 1:3719133‑M2/65‑22 (MQ=255) gCTGGAGTTACTGGTCGCTACGTTATCCAGACGTGTATCGTACTcaaactgcacgcgctgattgg < 1:203666‑M2/65‑22 (MQ=255) gCTGGAGTTACTGGTCGCTACGTTATCCAGACGTGTATCGTACTGAATCCCGCCACGCAATcccc > 1:1783544/1‑65 (MQ=255) ggAGTTACTGGTCGCTACGTTATCCAGACGTGTATCGTACTcaaactgcacgcgctgattggcgt < 1:1001126‑M2/65‑25 (MQ=255) aGTTACTGGTCGCTACGTTATCCAGACGTGTATCGTACTcaaactgcacgcgctgattggcgtag < 1:2142626‑M2/65‑27 (MQ=255) aGTTACTGGTCGCTACGTTATCCAGACGTGTATCGTACTcaaactgcacgcgctgattggcgtag < 1:517134‑M2/65‑27 (MQ=255) aGTTACTGGTCGCTACGTTATCCAGACGTGTATCGTACTGAATCCCGCCACGCAATCCCCAACGc > 1:487900/1‑65 (MQ=255) aGTTACTGGTCGCTACGTTATCCAGACGTGTATCGTACTGAATCCCGCCACGCAATCCCCAACGc > 1:3132423/1‑65 (MQ=255) cTGGTCGCTACGTTATCCAGACGTGTATCGTACTGAATCCCGCCACGCAATCCCCAACGCTCGga < 1:3293562/65‑1 (MQ=255) tGGTCGCTACGTTATCCAGACGTGTATCGTACTcaagctgcacgcgctgattggcgtagcgcgcc < 1:1211972‑M2/65‑33 (MQ=255) tGGTCGCTACGTTATCCAGACGTGTATCGTACTcaaactgcacgcgctgattggcgtagcgcgcc < 1:2725172‑M2/65‑33 (MQ=255) gTCGCTACGTTATCCAGACGTGTATCGTACTcaaactgcacgcgctgattggcgtagcgcgccgc < 1:388681‑M2/65‑35 (MQ=255) cGCTACGTTATCCAGACGTGTATCGTACTcaaactgcacgcgctgattggcgtagcgcgccgcat > 1:269154‑M2/1‑29 (MQ=255) gCTACGTTATCCAGACGTGTATCTTACTGAATCCCGCCACGCAATCCCCAACGCTCGGAGATACg < 1:1056351/65‑1 (MQ=255) aCGTTATCCAGACGTGTATCGTACTcaaactgcacgcgctgattggcgtagcgcgccgcatcttc < 1:738638‑M2/65‑41 (MQ=255) aCGTTATCCAGACGTGTATCGTACTcaaactgcacgcgctgattggcgtagcgcgccgcatcttc < 1:1747252‑M2/65‑41 (MQ=255) gTTATCCAGACGTGTATCGTACTcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaa < 1:3027000‑M2/65‑43 (MQ=255) gTTATCCAGACGTGTATCGTACTcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaa < 1:3449393‑M2/65‑43 (MQ=255) gTTATCCAGACGTGTACCGTACTcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaa < 1:2066480‑M2/65‑43 (MQ=255) aTCCAGACGTGTATCGTACTcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaaagg > 1:857333‑M2/1‑20 (MQ=255) aTCCAGACGTGTATCGTACTcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaaagg > 1:1077651‑M2/1‑20 (MQ=255) ccAGACGTGTATCGTACTcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaaaggcg < 1:2390648‑M2/65‑48 (MQ=255) ccAGACGTGTATCGTACTcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaaaggcg < 1:148556‑M2/65‑48 (MQ=255) ccAGACGTGTATCGTACTcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaaaggcg < 1:1894426‑M2/65‑48 (MQ=255) ccAGACGTGTATCGTACTcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaaaggcg < 1:190726‑M2/65‑48 (MQ=255) ccAGACGTGTATCGTACTcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaaagccg < 1:285949‑M2/65‑48 (MQ=255) ccAGACGTGTATCGTACTcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaaacgcg < 1:921944‑M2/65‑48 (MQ=255) cAGACGTGTATCGTACTcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaaaggcgc > 1:3420567‑M2/1‑17 (MQ=255) gACGTGTATCGTACTcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaaaggcgcac < 1:34784‑M2/65‑51 (MQ=255) gACGTGTATCGTACTGAATCCCGCCACGCAATCCCCAACGCTCGGAGATACGCCAGTAAGTATCg < 1:1833639/65‑1 (MQ=255) cGTGTATCGTACTcaaactgcacgcgctgattggcgtagcgtgccgcatcttcaaaggcgcacat < 1:2587525‑M2/65‑53 (MQ=255) cGTGTATCGTACTcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaaaggcgcacat < 1:3872388‑M2/65‑53 (MQ=255) cGTGTATCGTACTcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaaaggcgcacat < 1:603471‑M2/65‑53 (MQ=255) cGTGTATCGTACTcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaaaggcgcacat < 1:2227737‑M2/65‑53 (MQ=255) cGTGTATCGTACTcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaaaggcgcacat < 1:1305209‑M2/65‑53 (MQ=255) cGTGTATCGTACTcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaaaggcgcacat < 1:1596206‑M2/65‑53 (MQ=255) cGTGTATCGTACTcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaaaggcgcacat < 1:2766691‑M2/65‑53 (MQ=255) cGTGTATCGTACTcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaaaggcgcacat < 1:2881998‑M2/65‑53 (MQ=255) cGTGTATCGTACTGAATCCCGCCACGCAATCCCCAACGCTCGGAGATACGCCAGTAAGTATCGcc > 1:1263161/1‑65 (MQ=255) gtgtATCGTACTcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaaaggcgcacatc > 1:2972996‑M2/1‑12 (MQ=255) gtgtATCGTACTcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaaaggcgcacatc > 1:3093325‑M2/1‑12 (MQ=255) gtgtATCGTACTcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaaaggcgcacatc > 1:394349‑M2/1‑12 (MQ=255) gtgtATCGTACTcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaaaggcgcacatc > 1:1361713‑M2/1‑12 (MQ=255) gtgtATCGTACTcaaactgcacgcgctgattggcatagcgcgccgcatcttcaaaggcgcacatc > 1:1644369‑M2/1‑12 (MQ=255) gtATCGTACTcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaaaggcgcacatcgc > 1:3826845‑M2/1‑10 (MQ=255) gtATCGTACTGAATCCCGCCACGCAATCCCCAACGCTCGGAGATACGCCAGTAAGTATCGCCTGc < 1:630806/65‑1 (MQ=255) tATCGTACTcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaaaggcgcacatcgcc > 1:2571659‑M2/1‑9 (MQ=255) aTCGTACTcaaactgcacgtgctgattggcgtagcgcgccgcatcttcaaaggcgcacatcgccg < 1:2412020‑M2/65‑58 (MQ=255) aTCGTACTcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaaaggcgcacatcgccg < 1:477750‑M2/65‑58 (MQ=255) aTCGTACTcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaaaggcgcacatcgccg < 1:973133‑M2/65‑58 (MQ=255) aTCGTACTcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaaaggcgcacatcgccg < 1:668468‑M2/65‑58 (MQ=255) aTCGTACTcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaaaggcgcacatcgccg < 1:568095‑M2/65‑58 (MQ=255) aTCGTACTcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaaaggcgcacatcgccg < 1:3394841‑M2/65‑58 (MQ=255) aTCGTACTcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaaaggcgcacatcgccg < 1:1027846‑M2/65‑58 (MQ=255) aTCGTACTcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaaaggcgcacatcgccg < 1:2245806‑M2/65‑58 (MQ=255) aTCGTACTcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaaaggcgcacatcgccg < 1:3141978‑M2/65‑58 (MQ=255) aTCGTACTcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaaaggcgcacatcgccg < 1:3555941‑M2/65‑58 (MQ=255) tCGTACTcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaaaggcgcacatcgccgt > 1:2891388‑M2/1‑7 (MQ=255) tCGTACTcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaaaggcgcacatcgccgt > 1:1865576‑M2/1‑7 (MQ=255) cGTACTcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaaaggcgcacatcgccgta < 1:1987148‑M2/65‑60 (MQ=255) cGTACTcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaaaggcgcacatcgccgta < 1:1411848‑M2/65‑60 (MQ=255) cGTACTcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaaaggcgcacatcgccgta < 1:1172700‑M2/65‑60 (MQ=255) cGGACTcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaaaggcgcacatcgcccta < 1:2193035‑M2/65‑60 (MQ=255) gTACTcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaaaggcgcacatcgccgtac > 1:1881124‑M2/1‑5 (MQ=255) aCTcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaaaggcgcacatcgccgtaccg < 1:2273067‑M2/65‑63 (MQ=255) tcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaaaggcgcacatcgccgtaccgta < 1:2455830‑M2/65‑65 (MQ=255) tcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaaaggcgcacatcgccgtaccgta < 1:2352187‑M2/65‑65 (MQ=255) tcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaaaggcgcacatcgccgtaccgta > 1:2009124‑M2/1‑1 (MQ=255) tcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaaaggcgcacatcgccgtaccgta < 1:1500570‑M2/65‑65 (MQ=255) tcaaactgcacgcgctgattggcgtagcgcgccgcatcttcaaaggcgcacatcgccgtaccgta > 1:1300641‑M2/1‑1 (MQ=255) | TTCATCCCGACGGTATTCAATGCTGGAGTTACTGGTCGCTACGTTATCCAGACGTGTATCGTACTGAATCCCGCCACGCAATCCCCAACGCTCGGAGATACGCCAGTAAGTATCGCCTGCCCACACCAG > NC_000913/55166‑55294 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |