| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 39579 = | 45 (0.910) | 427 (8.650) | 59/128 | 0.0 | 89.0% | coding (808/1143 nt) | caiA | crotonobetainyl‑CoA reductase |
| ? | NC_000913 | = 55230 | 61 (1.240) | coding (1880/2355 nt) | lptD | lipopolysaccharide assembly protein LptD | |||||
Only 100 of 472 total aligned reads displayed.
TTTAATTTGATCGCCATGTGGGCGAATTTTTCCTGAATCAACTGGAAACGACCAATAGCCTCGCCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGCACATCGCCGTACCGTA > NC_000913/39515‑39642 | tcatcccgacggtattcaatgctggagttactggtcgctacgttatccagacgtgtatcgtactc < 1:286125‑M1/1‑1 (MQ=255) tcccgacggtattcaatgctggagttactggtcgctacgttatccagacgtgtatcgtactCaaa > 1:3800494‑M1/62‑65 (MQ=255) tcccgacggtattcaatgctggagttactggtcgctacgttatccagacgtgtatcgtactCaaa > 1:1133520‑M1/62‑65 (MQ=255) tttGATCGCCATGTGGGCGAATTTTTCCTGAATCAACTGGAAACGACCAATAGCCTCGCCAAACt < 1:794117/65‑1 (MQ=255) gtattcaatgctggagttactgggcgctacgttatccagacgtgtatcgtactCAAACTGCAcgc > 1:1282240‑M1/54‑65 (MQ=255) tattcaatgctggagttactggtcgctacgttatccagacgtgtatcgtactCAAACTGCAcgcg > 1:3498799‑M1/53‑65 (MQ=255) ttcaatgctggagttcctggtcgctacgttatccagacgtgtatcgtactCAAACTGCACGCGCt > 1:3531632‑M1/51‑65 (MQ=255) ttcaatgctggagttactggtcgctacgttatccagacgtgtatcgtactCAAACTGCACGCGCt > 1:1217302‑M1/51‑65 (MQ=255) ttcaatgctggagttactggtcgctacgttatccagacgtgtatcgtactCAAACTGCACGCGCt > 1:2008718‑M1/51‑65 (MQ=255) ttcaatgctggagttactggtcgctacgttatccagacgtgtatcgtactCAAACTGCACGCGCt > 1:906406‑M1/51‑65 (MQ=255) ttcaatgctggagttactggtcgctacgttatccagacgtgtatcgtactCAAACTGCACGCGCt > 1:1311794‑M1/51‑65 (MQ=255) tcaatgctggagttactggtcgctacgttatccagacgtgtatcgtactCAAACTGCACGCGCTg < 1:3045600‑M1/16‑1 (MQ=255) tcaatgctggagttactggtcgctacgttatccagacgtgtatcggactCAAACTGCACGCGCTg < 1:2839788‑M1/16‑1 (MQ=255) tcaatgctggagttactgggcgctacgttatccagacgtgtatcgtactCAAACTGCACGCGCTg < 1:2022729‑M1/16‑1 (MQ=255) tgtgGGCGAATTTTTCCTGAATCAACTGGAAACGACCAATAGCCTCGCCAAACTGCACGCGCTGa < 1:1785419/65‑1 (MQ=255) caatgctggagttactggtcgctacgttatccagacgtgtatcgtactCAAACTGCACGCGCTGa > 1:2583888‑M1/49‑65 (MQ=255) caatgctggagttactggtcgctacgttatccagacgtgtatcgtactCAAACTGCACGCGCTGa > 1:2402640‑M1/49‑65 (MQ=255) caatgctggagttactggtcgctacgttatccagacgtgtatcgtactCAAACTGCACGCGCTGa > 1:2139508‑M1/49‑65 (MQ=255) gctggagttactggtcgctacgttatccagacgtgtatcgtactCAAACTGCACGCGCTGATTgg < 1:959007‑M1/21‑1 (MQ=255) gctggagttactggtcgctacgttatccagacgtgtatcgtactCAAACTGCACGCGCTGATTgg < 1:3719133‑M1/21‑1 (MQ=255) gctggagttactggtcgctacgttatccagacgtgtatcgtactCAAACTGCACGCGCTGATTgg < 1:2057897‑M1/21‑1 (MQ=255) gCGAATTTTTCCTGAATCAACTGGAAACGACCAATAGCCTCGCCAAACTGCACGCGCTGATTGGc < 1:1983941/65‑1 (MQ=255) ctggagttactggtcgctacgttatccagacgtgtatcgtactCAAACTGCACGCGCTGATTGGc > 1:2929092‑M1/44‑65 (MQ=255) ctggagttactggtcgctacgttatccagacgtgtatcgtactCAAACTGCACGCGCTGATTGGc > 1:19494‑M1/44‑65 (MQ=255) ggagttactggtcgctacgttatccagacgtgtatcgtactCAAACTGCACGCGCTGATTGGCGt < 1:1001126‑M1/24‑1 (MQ=255) agttactggtcgctacgttatccagacgtgtatcgtactCAAACTGCACGCGCTGATTGGCGTAg < 1:3133970‑M1/26‑1 (MQ=255) agttactggtcgctacgttatccagacgtgtatcgtactCAAACTGCACGCGCTGATTGGCGTAg < 1:866007‑M1/26‑1 (MQ=255) agttactggtcgctacgttatccagacgtgtatcgtactCAAACTGCACGCGCTGATTGGCGTAg < 1:517134‑M1/26‑1 (MQ=255) agttactggtcgctacgttatccagacgtgtatcgtactCAAACTGCACGCGCTGATTGGCGTAg < 1:3889892‑M1/26‑1 (MQ=255) agttactggtcgctacgttatccagacgtgtatcgtactCAAACTGCACGCGCTGATTGGCGTAg < 1:2599282‑M1/26‑1 (MQ=255) agttactggtcgctacgttatccagacgtgtatcgtactCAAACTGCACGCGCTGATTGGCGTAg < 1:1871703‑M1/26‑1 (MQ=255) agctactggtcgctacgttatccagacgtgtatcgtactCAAACTGCACGCGCTGATTGGCGTAg < 1:2168535‑M1/26‑1 (MQ=255) tggtcgctacgttatccagacgtgtatcgtactCAAACTGCACGCGCTGATTGGCGTAGCGcgcc < 1:1886792‑M1/32‑1 (MQ=255) tggtcgctacgttatccagacgtgtatcgtactCAAACTGCACGCGCTGATTGGCGTAGCGcgcc < 1:2725172‑M1/32‑1 (MQ=255) gtcgctacgttatccagacgtgtatcgtactCAAACTGCACGCGCTGATTGGCGTAGCGcgccgc < 1:183906‑M1/34‑1 (MQ=255) cgctacgttatccagacgtgtatcgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCAt > 1:269154‑M1/30‑65 (MQ=255) ctacgttatccagacgtgtatcgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCt > 1:2634566‑M1/28‑65 (MQ=255) acgttatccagacgtgtatcgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTc < 1:738638‑M1/40‑1 (MQ=255) acgttatccagacgtgtatcgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTc < 1:2883321‑M1/40‑1 (MQ=255) acgttatccagacgtgtatcgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTc < 1:1747252‑M1/40‑1 (MQ=255) aaaCGACCAATAGCCTCGCCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGgc > 1:2300176/1‑65 (MQ=255) aaaCGACCAATAGCCTCGCCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGgc > 1:1244307/1‑65 (MQ=255) ccagacgtgtatcgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAcgcg < 1:921944‑M1/47‑1 (MQ=255) ccagacgtgtatcgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGgcg < 1:148556‑M1/47‑1 (MQ=255) ccagacgtgtatcgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGgcg < 1:1911497‑M1/47‑1 (MQ=255) cagacgtgtatcgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGgcgc > 1:3420567‑M1/18‑65 (MQ=255) agacgtgtatcgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCGTCTTCAAAGGCGca < 1:1899194‑M1/49‑1 (MQ=255) agacgtgtatcgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGca < 1:3206889‑M1/49‑1 (MQ=255) agacgtgtatcgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGca < 1:208046‑M1/49‑1 (MQ=255) gacgtgtatcgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGcac < 1:34784‑M1/50‑1 (MQ=255) cgtgtatcgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCgcacac < 1:446829‑M1/52‑2 (MQ=255) cgtgtatcgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGCACAt < 1:885774‑M1/52‑1 (MQ=255) cgtgtatcgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGCACAt < 1:3351269‑M1/52‑1 (MQ=255) cgtgtatcgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGCACAt < 1:1640031‑M1/52‑1 (MQ=255) cgtgtatcgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGCACAt < 1:1596206‑M1/52‑1 (MQ=255) cgtgtatcgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGCACAt < 1:40109‑M1/52‑1 (MQ=255) cgtgtatcgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGCACAt < 1:1263941‑M1/52‑1 (MQ=255) cgtgtatcgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGCACAt < 1:2414825‑M1/52‑1 (MQ=255) cgtgtatcgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGCACAt < 1:3873056‑M1/52‑1 (MQ=255) gtttatcgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGCACATc > 1:2816500‑M1/13‑65 (MQ=255) gtgtatcgtactCAAACTGCACGCGCTGATTGGCGTAGGGCGCCGCATCTTCAAAGGCGCACATc > 1:3277979‑M1/13‑65 (MQ=255) gtgtatcgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGCACATc > 1:1361713‑M1/13‑65 (MQ=255) gtgtatcgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGCACATc > 1:1176102‑M1/13‑65 (MQ=255) gtgtatcgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGCACATc > 1:3093325‑M1/13‑65 (MQ=255) gtatcgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGCACATCGc > 1:169518‑M1/11‑65 (MQ=255) gtatcgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGCACATCGc > 1:3826845‑M1/11‑65 (MQ=255) gtatcgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGCACATCGc > 1:2979206‑M1/11‑65 (MQ=255) gtatcgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGCACATCGc > 1:2535421‑M1/11‑65 (MQ=255) gtatcgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAACGCGCACATCGc > 1:3695746‑M1/11‑65 (MQ=255) aTAGCCTCGCCAAACTACACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGCACATCGc < 1:7047/65‑1 (MQ=255) tatcgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGCACATCGcc > 1:3456284‑M1/10‑65 (MQ=255) atcgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGCACATCGccg < 1:1027846‑M1/57‑1 (MQ=255) atcgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGCACATCGccg < 1:1085843‑M1/57‑1 (MQ=255) atcgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGCACATCGccg < 1:568095‑M1/57‑1 (MQ=255) atcgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGCACATCGccg < 1:668468‑M1/57‑1 (MQ=255) atcgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGCACATCGccg < 1:2505510‑M1/57‑1 (MQ=255) atcgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGCACATCGccg < 1:2751397‑M1/57‑1 (MQ=255) atcgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGCACATCGccg < 1:3394841‑M1/57‑1 (MQ=255) atcgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGCACATCGccg < 1:3141978‑M1/57‑1 (MQ=255) atcgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGCACATCGccg < 1:1667272‑M1/57‑1 (MQ=255) atcgtactCAAACTGCACGCGCTGATTGGCGAAGGGCGCCGCATCATCAAAGGCGGACctcggcg < 1:2372442‑M1/57‑4 (MQ=255) tcgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGCACATCGccgt > 1:362307‑M1/8‑65 (MQ=255) tcgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGCACATCGccgt > 1:3749884‑M1/8‑65 (MQ=255) gCCTCGCCAAACTGCACGCGCTGATTGGCGCAGCGCGCCGCATCTTCAAAGGCGCGCATCGccgt > 1:48356/1‑65 (MQ=39) cgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCCAAGGCGCACATCGccgta < 1:2244915‑M1/59‑1 (MQ=255) cgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGCACATCGccgta < 1:2969827‑M1/59‑1 (MQ=255) cgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGCACATCGccgta < 1:2800979‑M1/59‑1 (MQ=255) cgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGCACATCGccgta < 1:1411848‑M1/59‑1 (MQ=255) cgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGCACATCGccgta < 1:2323521‑M1/59‑1 (MQ=255) cgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGCACATCGccgta < 1:2272253‑M1/59‑1 (MQ=255) cgtactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGCACATCGccgta < 1:3558696‑M1/59‑1 (MQ=255) cggactCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGCACAtcgcccta < 1:2193035‑M1/59‑4 (MQ=255) tactCAAACTTCACGCGCTGATTGGCGTAGCGCTCCGCATCTTCAAAGGCGCACATCGccgtacc > 1:105782‑M1/5‑65 (MQ=255) actCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGCACATCGccgtaccg < 1:1448484‑M1/62‑1 (MQ=255) tCAAACTGCGCGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGCACATCGccgtaccgta > 1:130112‑M1/2‑65 (MQ=255) tCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGCACAtagccgtacctgt < 1:626723‑M1/64‑4 (MQ=255) tCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGCACATCgccgtaccgtg < 1:596207‑M1/64‑2 (MQ=255) tCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGCACATCGccgtaccgta < 1:1500570‑M1/64‑1 (MQ=255) tCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGCACATCGccgtaccgta < 1:255299‑M1/64‑1 (MQ=255) tCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGCACATCGccgtaccgta < 1:2455830‑M1/64‑1 (MQ=255) | TTTAATTTGATCGCCATGTGGGCGAATTTTTCCTGAATCAACTGGAAACGACCAATAGCCTCGCCAAACTGCACGCGCTGATTGGCGTAGCGCGCCGCATCTTCAAAGGCGCACATCGCCGTACCGTA > NC_000913/39515‑39642 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |