| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 807339 | 5 (0.060) | 69 (0.810) | 50/176 | NT | 95.2% | intergenic (‑58/+94) | ybhC/ybhB | outer membrane lipoprotein YhbC/putative kinase inhibitor |
| ? | NC_000913 | 4171877 = | 2 (0.020) | intergenic (+121/‑180) | rrfB/murB | 5S ribosomal RNA/UDP‑N‑acetylenolpyruvoylglucosamine reductase | |||||
AATGCCAGCGCCAGACGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/807244‑807339‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACA > NC_000913/4171877‑4171974 AATGCCAGCGCCAGACGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGG > 1:380539/1‑99AATGCCAGCGCCAGACGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGG > 1:738373/1‑99AATGCCAGCGCCAGACGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGG > 1:121272/1‑99 ATGCCAGCGCCAGACGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGGC > 1:2195174/1‑99 GCCAGCGCCAGACGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGATGCCTGCTTTTTTATACCGGCCC < 1:626779/99‑1 AGCGCCAGACGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGA > 1:1302288/1‑99 GCGCCAGACGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAG > 2:1388897/1‑99 GCGCCAGACGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAG < 1:1680624/99‑1 CAGACGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTG < 2:763148/99‑1 AGACGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGG < 1:889111/99‑1 GACGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGC > 2:1876138/1‑99 CGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGG > 1:224630/1‑99 CGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGG > 2:760031/1‑99 GGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGG < 1:2158891/99‑1 tAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGACGCCTGCTTTTTTATACCGGCCCGGAAGGTGGCGGCCAG > 2:29424/2‑99 AAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAG > 1:591083/1‑99 ACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGA < 2:668840/99‑1 ACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATACAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGA < 2:2032000/99‑1 GAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGC > 1:1049289/1‑99 GAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGC > 1:2253819/1‑99 AAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCC < 1:1143210/99‑1 AAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCC < 1:299415/99‑1 AAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCC > 2:1451703/1‑99 AAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCC > 1:959064/1‑99 ATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGC > 2:2168505/1‑99 TGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCATGACGCCCGCC > 2:265889/1‑99 GTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAACATGATTCCGGTGAAGCCGGCTTTTTTATACCGGCCCGGGGGGTGCCGGGCAGGACGCCCGCCA < 2:867504/99‑1 GTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCA < 2:1237267/99‑1 GTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCA < 1:81524/99‑1 GTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATA < 2:1824095/99‑1 TTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAA < 2:2026679/99‑1 TCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAA < 2:238768/99‑1 CAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTG > 1:2261170/1‑99 AGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGC > 2:1171055/1‑99 TTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAG > 2:315104/1‑99 TCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCAT < 2:808419/99‑1 GGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAA > 1:1847858/1‑99 CTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATT < 2:951154/99‑1 TATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTA > 2:2125075/1‑99 ATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAA < 1:896558/99‑1 AAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCA < 1:1761572/99‑1 AATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAG > 1:502686/1‑99 TAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAA < 2:1685698/99‑1 TAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAA < 2:2069432/99‑1 TAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAA > 2:1140715/1‑99 TAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAA > 2:1564030/1‑99 TAGAAAAATGAATCCGGTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGCGCAGGACCCCCGCCATACACTGCCAGGCCTCAACTTAAGCAGAA > 2:1387398/1‑99 AGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAG < 2:795079/99‑1 AGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAG < 1:241534/99‑1 GAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGG > 2:1266958/1‑99 AAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCC < 1:1863289/99‑1 AAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCC > 1:458147/1‑99 AAAATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCC < 1:644940/99‑1 AATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCAT < 2:1814556/99‑1 AATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCAT < 2:1694890/99‑1 ATGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATC > 1:1373776/1‑99 TGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCC < 1:518619/99‑1 TGAATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCC < 2:102492/99‑1 AATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTG > 1:2072168/1‑99 AATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTG > 1:750454/1‑99 ATCCGTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGA < 1:2194303/99‑1 GTTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGn < 1:765192/99‑2 TTGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGAT > 1:206168/1‑99 TGAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATG < 2:1217753/99‑1 GAAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGG < 1:2121908/99‑1 AAGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGC < 2:1529930/99‑1 AGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCC > 1:1477135/1‑99 AGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCC > 1:1017548/1‑99 AGCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCC > 1:1008486/1‑99 GCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCT < 2:1595679/99‑1 GCCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCT > 1:1174173/1‑99 CCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTT > 2:1961765/1‑99 CCTGCTTTTTTATACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTT < 1:24671/99‑1 TATACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTC < 1:773486/99‑1 TACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTA > 2:1355093/1‑99 TACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTA < 1:1318965/99‑1 TACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTA > 1:1230801/1‑99 TACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTA > 2:1269466/1‑99 cCCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTAC < 1:311416/98‑1 CCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACA < 2:491388/99‑1 CCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACA > 2:738282/1‑99 CCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACA > 1:657843/1‑99 AATGCCAGCGCCAGACGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/807244‑807339‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACA > NC_000913/4171877‑4171974 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |