New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 8073395 (0.060)69 (0.810) 50/176 NT 95.2% intergenic (‑58/+94) ybhC/ybhB outer membrane lipoprotein YhbC/putative kinase inhibitor
?NC_000913 4171877 = 2 (0.020)intergenic (+121/‑180) rrfB/murB 5S ribosomal RNA/UDP‑N‑acetylenolpyruvoylglucosamine reductase

GAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAA  >  NC_000913/4171780‑4171975
                                                                                                 |                                                                                                  
gAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACg                                                                                                   >  2:188854/1‑99 (MQ=32)
 aatgccagcgccagacgggaaactgaaaatgtgttcacaggttgctccgggctatgaaatagaaaaatgaatccgttgaagcctgcttttttatacCgg                                                                                                  >  1:738373‑M2/97‑99 (MQ=255)
 aatgccagcgccagacgggaaactgaaaatgtgttcacaggttgctccgggctatgaaatagaaaaatgaatccgttgaagcctgcttttttatacCgg                                                                                                  >  1:121272‑M2/97‑99 (MQ=255)
 aatgccagcgccagacgggaaactgaaaatgtgttcacaggttgctccgggctatgaaatagaaaaatgaatccgttgaagcctgcttttttatacCgg                                                                                                  >  1:380539‑M2/97‑99 (MQ=255)
 aaaGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACgg                                                                                                  >  2:2186870/1‑99 (MQ=31)
 aaaGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACgg                                                                                                  >  1:438477/1‑99 (MQ=31)
 aaaGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACgg                                                                                                  <  2:1141637/99‑1 (MQ=31)
  atgccagcgccagacgggaaactgaaaatgtgttcacaggttgctccgggctatgaaatagaaaaatgaatccgttgaagcctgcttttttatacCGGc                                                                                                 >  1:2195174‑M2/96‑99 (MQ=255)
    gccagcgccagacgggaaactgaaaatgtgttcacaggttgctccgggctatgaaatagaaaaatgaatccgttgatgcctgcttttttatacCGGccc                                                                                               <  1:626779‑M2/6‑1 (MQ=255)
       agcgccagacgggaaactgaaaatgtgttcacaggttgctccgggctatgaaatagaaaaatgaatccgttgaagcctgcttttttatacCGGCCCGGa                                                                                            >  1:1302288‑M2/91‑99 (MQ=255)
        gcgccagacgggaaactgaaaatgtgttcacaggttgctccgggctatgaaatagaaaaatgaatccgttgaagcctgcttttttatacCGGCCCGGAg                                                                                           <  1:1680624‑M2/10‑1 (MQ=255)
        gcgccagacgggaaactgaaaatgtgttcacaggttgctccgggctatgaaatagaaaaatgaatccgttgaagcctgcttttttatacCGGCCCGGAg                                                                                           >  2:1388897‑M2/90‑99 (MQ=255)
            cagacgggaaactgaaaatgtgttcacaggttgctccgggctatgaaatagaaaaatgaatccgttgaagcctgcttttttatacCGGCCCGGAGGGTg                                                                                       <  2:763148‑M2/14‑1 (MQ=255)
             agacgggaaactgaaaatgtgttcacaggttgctccgggctatgaaatagaaaaatgaatccgttgaagcctgcttttttatacCGGCCCGGAGGGTgg                                                                                      <  1:889111‑M2/15‑1 (MQ=255)
              gacgggaaactgaaaatgtgttcacaggttgctccgggctatgaaatagaaaaatgaatccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGc                                                                                     >  2:1876138‑M2/84‑99 (MQ=255)
                cgggaaactgaaaatgtgttcacaggttgctccgggctatgaaatagaaaaatgaatccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGCgg                                                                                   >  2:760031‑M2/82‑99 (MQ=255)
                cgggaaactgaaaatgtgttcacaggttgctccgggctatgaaatagaaaaatgaatccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGCgg                                                                                   >  1:224630‑M2/82‑99 (MQ=255)
                 gggaaactgaaaatgtgttcacaggttgctccgggctatgaaatagaaaaatgaatccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGCggg                                                                                  <  1:2158891‑M2/19‑1 (MQ=255)
                    taactgaaaatgtgttcacaggttgctccgggctatgaaatagaaaaatgaatccgttgacgcctgcttttttatacCGGCCCGGAAGGTGGCGGCCAg                                                                               >  2:29424‑M2/78‑99 (MQ=255)
                    aaactgaaaatgtgttcacaggttgctccgggctatgaaatagaaaaatgaatccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAg                                                                               >  1:591083‑M2/78‑99 (MQ=255)
                      actgaaaatgtgttcacaggttgctccgggctatgaaatagaaaaatgaatccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGa                                                                             <  2:668840‑M2/24‑1 (MQ=255)
                      actgaaaatgtgttcacaggttgctccgggctatgaaatacaaaaatgaatccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGa                                                                             <  2:2032000‑M2/24‑1 (MQ=255)
                         gaaaatgtgttcacaggttgctccgggctatgaaatagaaaaatgaatccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGAcgc                                                                          >  1:1049289‑M2/73‑99 (MQ=255)
                         gaaaatgtgttcacaggttgctccgggctatgaaatagaaaaatgaatccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGAcgc                                                                          >  1:2253819‑M2/73‑99 (MQ=255)
                          aaaatgtgttcacaggttgctccgggctatgaaatagaaaaatgaatccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGAcgcc                                                                         <  1:1143210‑M2/28‑1 (MQ=255)
                          aaaatgtgttcacaggttgctccgggctatgaaatagaaaaatgaatccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGAcgcc                                                                         <  1:299415‑M2/28‑1 (MQ=255)
                           aaatgtgttcacaggttgctccgggctatgaaatagaaaaatgaatccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGAcgccc                                                                        >  2:1451703‑M2/71‑99 (MQ=255)
                           aaatgtgttcacaggttgctccgggctatgaaatagaaaaatgaatccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGAcgccc                                                                        >  1:959064‑M2/71‑99 (MQ=255)
                             atgtgttcacaggttgctccgggctatgaaatagaaaaatgaatccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGAcgcccgc                                                                      >  2:2168505‑M2/69‑99 (MQ=255)
                              tgtgttcacaggttgctccgggctatgaaatagaaaaatgaatccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCATGAcgcccgcc                                                                     >  2:265889‑M2/68‑99 (MQ=255)
                               gtgttcacaggttgctccgggctatgaaatagaaacatgattccggtgaagccggcttttttatacCGGCCCGGGGGGTGCCGGGCAGGACGCCCGCCa                                                                    <  2:867504‑M2/33‑1 (MQ=255)
                               gtgttcacaggttgctccgggctatgaaatagaaaaatgaatccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCa                                                                    <  2:1237267‑M2/33‑1 (MQ=255)
                               gtgttcacaggttgctccgggctatgaaatagaaaaatgaatccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCa                                                                    <  1:81524‑M2/33‑1 (MQ=255)
                                 gttcacaggttgctccgggctatgaaatagaaaaatgaatccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATa                                                                  <  2:1824095‑M2/35‑1 (MQ=255)
                                  ttcacaggttgctccgggctatgaaatagaaaaatgaatccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATaa                                                                 <  2:2026679‑M2/36‑1 (MQ=255)
                                   tcacaggttgctccgggctatgaaatagaaaaatgaatccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATaaa                                                                <  2:238768‑M2/37‑1 (MQ=255)
                                      caggttgctccgggctatgaaatagaaaaatgaatccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTg                                                             >  1:2261170‑M2/60‑99 (MQ=255)
                                       aggttgctccgggctatgaaatagaaaaatgaatccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGc                                                            >  2:1171055‑M2/59‑99 (MQ=255)
                                          ttgctccgggctatgaaatagaaaaatgaatccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAg                                                         >  2:315104‑M2/56‑99 (MQ=255)
                                              tccgggctatgaaatagaaaaatgaatccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCAt                                                     <  2:808419‑M2/48‑1 (MQ=255)
                                                 gggctatgaaatagaaaaatgaatccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCaa                                                  >  1:1847858‑M2/49‑99 (MQ=255)
                                                    ctatgaaatagaaaaatgaatccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAAtt                                               <  2:951154‑M2/54‑1 (MQ=255)
                                                     tatgaaatagaaaaatgaatccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTa                                              >  2:2125075‑M2/45‑99 (MQ=255)
                                                      atgaaatagaaaaatgaatccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTaa                                             <  1:896558‑M2/56‑1 (MQ=255)
                                                         aaatagaaaaatgaatccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCa                                          <  1:1761572‑M2/59‑1 (MQ=255)
                                                          aatagaaaaatgaatccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAg                                         >  1:502686‑M2/40‑99 (MQ=255)
                                                            tagaaaaatgaatccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGaa                                       >  2:1564030‑M2/38‑99 (MQ=255)
                                                            tagaaaaatgaatccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGaa                                       <  2:2069432‑M2/62‑1 (MQ=255)
                                                            tagaaaaatgaatccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGaa                                       >  2:1140715‑M2/38‑99 (MQ=255)
                                                            tagaaaaatgaatccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGaa                                       <  2:1685698‑M2/62‑1 (MQ=255)
                                                            tagaaaaatgaatccggtgaagcctgcttttttatacCGGCCCGGAGGGTGGCGCGCAGGACCCCCGCCATACACTGCCAGGCCTCAACTTAAGCAGaa                                       >  2:1387398‑M2/38‑99 (MQ=255)
                                                             agaaaaatgaatccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAg                                      <  1:241534‑M2/63‑1 (MQ=255)
                                                             agaaaaatgaatccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAg                                      <  2:795079‑M2/63‑1 (MQ=255)
                                                              gaaaaatgaatccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAgg                                     >  2:1266958‑M2/36‑99 (MQ=255)
                                                                aaaatgaatccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGcc                                   >  1:458147‑M2/34‑99 (MQ=255)
                                                                aaaatgaatccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGcc                                   <  1:644940‑M2/66‑1 (MQ=255)
                                                                aaaatgaatccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGcc                                   <  1:1863289‑M2/66‑1 (MQ=255)
                                                                  aatgaatccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCAt                                 <  2:1814556‑M2/68‑1 (MQ=255)
                                                                  aatgaatccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCAt                                 <  2:1694890‑M2/68‑1 (MQ=255)
                                                                   atgaatccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATc                                >  1:1373776‑M2/31‑99 (MQ=255)
                                                                    tgaatccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATcc                               <  2:102492‑M2/70‑1 (MQ=255)
                                                                    tgaatccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATcc                               <  1:518619‑M2/70‑1 (MQ=255)
                                                                      aatccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTg                             >  1:2072168‑M2/28‑99 (MQ=255)
                                                                      aatccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTg                             >  1:750454‑M2/28‑99 (MQ=255)
                                                                       atccgttgaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGa                            <  1:2194303‑M2/73‑1 (MQ=255)
                                                                           gttgaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGAcggn                        <  1:765192‑M2/77‑2 (MQ=255)
                                                                            ttgaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGAt                       >  1:206168‑M2/22‑99 (MQ=255)
                                                                             tgaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATg                      <  2:1217753‑M2/79‑1 (MQ=255)
                                                                              gaagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATgg                     <  1:2121908‑M2/80‑1 (MQ=255)
                                                                               aagcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGc                    <  2:1529930‑M2/81‑1 (MQ=255)
                                                                                agcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGcc                   >  1:1017548‑M2/18‑99 (MQ=255)
                                                                                agcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGcc                   >  1:1008486‑M2/18‑99 (MQ=255)
                                                                                agcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGcc                   >  1:1477135‑M2/18‑99 (MQ=255)
                                                                                 gcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCt                  <  2:1595679‑M2/83‑1 (MQ=255)
                                                                                 gcctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCt                  >  1:1174173‑M2/17‑99 (MQ=255)
                                                                                  cctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCtt                 >  2:1961765‑M2/16‑99 (MQ=255)
                                                                                  cctgcttttttatacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCtt                 <  1:24671‑M2/84‑1 (MQ=255)
                                                                                          gAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGtt         <  2:2120080/99‑1 (MQ=33)
                                                                                           aaGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGttt        >  1:2158629/1‑99 (MQ=34)
                                                                                            tatacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTc       <  1:773486‑M2/94‑1 (MQ=255)
                                                                                            aGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTc       <  1:84662/99‑1 (MQ=35)
                                                                                            aGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTc       <  2:1357545/99‑1 (MQ=35)
                                                                                             gCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCt      >  1:432038/1‑99 (MQ=37)
                                                                                             gCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCt      >  1:418988/1‑99 (MQ=37)
                                                                                              tacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTa     >  2:1269466‑M2/4‑99 (MQ=255)
                                                                                              tacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTa     <  1:1318965‑M2/96‑1 (MQ=255)
                                                                                              tacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTa     >  1:1230801‑M2/4‑99 (MQ=255)
                                                                                              tacCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTa     >  2:1355093‑M2/4‑99 (MQ=255)
                                                                                               ccCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTAc    <  1:311416‑M2/97‑1 (MQ=255)
                                                                                                cCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACa   >  1:657843‑M2/2‑99 (MQ=255)
                                                                                                cCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACa   <  2:491388‑M2/98‑1 (MQ=255)
                                                                                                cCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACa   >  2:738282‑M2/2‑99 (MQ=255)
                                                                                                 cGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACaa  >  1:191766/1‑99 (MQ=255)
                                                                                                 |                                                                                                  
GAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAA  >  NC_000913/4171780‑4171975

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.