| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 807339 | 5 (0.060) | 69 (0.810) | 50/176 | NT | 95.2% | intergenic (‑58/+94) | ybhC/ybhB | outer membrane lipoprotein YhbC/putative kinase inhibitor |
| ? | NC_000913 | 4171877 = | 2 (0.020) | intergenic (+121/‑180) | rrfB/murB | 5S ribosomal RNA/UDP‑N‑acetylenolpyruvoylglucosamine reductase | |||||
GCCAATGCCAGCGCCAGACGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACTAACTTGAGCGAAACGGGAAGGTAAAAAGACAAAAAGTTGTTTTTAATACCTTTAAGTGATACCAGATGGCATTGCGCCATCTGGCAGAGTGATTAAC > NC_000913/807241‑807437 | gCCAATGCCAGCGCCAGACGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATAc < 1:1641106/99‑1 (MQ=255) aaTGCCAGCGCCAGACGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcgg > 1:738373‑M1/1‑96 (MQ=255) aaTGCCAGCGCCAGACGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcgg > 1:121272‑M1/1‑96 (MQ=255) aaTGCCAGCGCCAGACGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcgg > 1:380539‑M1/1‑96 (MQ=255) aTGCCAGCGCCAGACGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggc > 1:2195174‑M1/1‑95 (MQ=255) tGCCAGCGCCAGACGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACTAACt > 2:324886/1‑99 (MQ=255) gCCAGCGCCAGACGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGATGCCTGCTTTTTTATACcggccc < 1:626779‑M1/99‑7 (MQ=255) aGCGCCAGACGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccgga > 1:1302288‑M1/1‑90 (MQ=255) gcgcCAGACGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggag > 2:1388897‑M1/1‑89 (MQ=255) gcgcCAGACGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggag < 1:1680624‑M1/99‑11 (MQ=255) gcgcCAGACGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACTAACTTGAGc > 2:474125/1‑99 (MQ=255) cAGACGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtg < 2:763148‑M1/99‑15 (MQ=255) aGACGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtgg < 1:889111‑M1/99‑16 (MQ=255) gACGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggc > 2:1876138‑M1/1‑83 (MQ=255) cGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgg > 2:760031‑M1/1‑81 (MQ=255) cGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgg > 1:224630‑M1/1‑81 (MQ=255) gggAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcggg < 1:2158891‑M1/99‑20 (MQ=255) taacTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGACGCCTGCTTTTTTATACcggcccggaaggtggcggccag > 2:29424‑M1/2‑77 (MQ=255) aaaCTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcag > 1:591083‑M1/1‑77 (MQ=255) aCTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcagga < 2:668840‑M1/99‑25 (MQ=255) aCTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATACAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcagga < 2:2032000‑M1/99‑25 (MQ=255) gAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgc > 1:1049289‑M1/1‑72 (MQ=255) gAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgc > 1:2253819‑M1/1‑72 (MQ=255) aaaaTGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcc < 1:1143210‑M1/99‑29 (MQ=255) aaaaTGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcc < 1:299415‑M1/99‑29 (MQ=255) aaaTGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgccc > 1:959064‑M1/1‑70 (MQ=255) aaaTGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgccc > 2:1451703‑M1/1‑70 (MQ=255) aTGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgc > 2:2168505‑M1/1‑68 (MQ=255) tgtgTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcatgacgcccgcc > 2:265889‑M1/1‑67 (MQ=255) gtgtTCACAGGTTGCTCCGGGCTATGAAATAGAAACATGATTCCGGTGAAGCCGGCTTTTTTATACcggcccggggggtgccgggcaggacgcccgcca < 2:867504‑M1/99‑34 (MQ=255) gtgtTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgcca < 2:1237267‑M1/99‑34 (MQ=255) gtgtTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgcca < 1:81524‑M1/99‑34 (MQ=255) gtTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccata < 2:1824095‑M1/99‑36 (MQ=255) ttCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataa < 2:2026679‑M1/99‑37 (MQ=255) tCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaa < 2:238768‑M1/99‑38 (MQ=255) acaGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACTAACTTGAGCGAAACGGGAAGGTAAAAAGACAAAAAgtt > 2:1241/1‑99 (MQ=255) caGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactg > 1:2261170‑M1/1‑59 (MQ=255) aGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgc > 2:1171055‑M1/1‑58 (MQ=255) ttGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccag > 2:315104‑M1/1‑55 (MQ=255) tCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcat < 2:808419‑M1/99‑49 (MQ=255) gggCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaa > 1:1847858‑M1/1‑48 (MQ=255) cTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaatt < 2:951154‑M1/99‑55 (MQ=255) tATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaatta > 2:2125075‑M1/1‑44 (MQ=255) aTGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaa < 1:896558‑M1/99‑57 (MQ=255) aaaTAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagca < 1:1761572‑M1/99‑60 (MQ=255) aaTAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcag > 1:502686‑M1/1‑39 (MQ=255) tAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaa < 2:1685698‑M1/99‑63 (MQ=255) tAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaa < 2:2069432‑M1/99‑63 (MQ=255) tAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaa > 2:1140715‑M1/1‑37 (MQ=255) tAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaa > 2:1564030‑M1/1‑37 (MQ=255) tAGAAAAATGAATCCGGTGAAGCCTGCTTTTTTATACcggcccggagggtggcgcgcaggacccccgccatacactgccaggcctcaacttaagcagaa > 2:1387398‑M1/1‑37 (MQ=255) aGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaag < 1:241534‑M1/99‑64 (MQ=255) aGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaag < 2:795079‑M1/99‑64 (MQ=255) gAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaagg > 2:1266958‑M1/1‑35 (MQ=255) aaaaTGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggcc < 1:644940‑M1/99‑67 (MQ=255) aaaaTGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggcc > 1:458147‑M1/1‑33 (MQ=255) aaaaTGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggcc < 1:1863289‑M1/99‑67 (MQ=255) aaTGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggccat < 2:1814556‑M1/99‑69 (MQ=255) aaTGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggccat < 2:1694890‑M1/99‑69 (MQ=255) aTGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggccatc > 1:1373776‑M1/1‑30 (MQ=255) tGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggccatcc < 2:102492‑M1/99‑71 (MQ=255) tGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggccatcc < 1:518619‑M1/99‑71 (MQ=255) aaTCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggccatcctg > 1:2072168‑M1/1‑27 (MQ=255) aaTCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggccatcctg > 1:750454‑M1/1‑27 (MQ=255) aTCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggccatcctga < 1:2194303‑M1/99‑74 (MQ=255) gTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggccatcctgacggn < 1:765192‑M1/99‑78 (MQ=255) ttGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggccatcctgacggat > 1:206168‑M1/1‑21 (MQ=255) tGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggccatcctgacggatg < 2:1217753‑M1/99‑80 (MQ=255) gAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggccatcctgacggatgg < 1:2121908‑M1/99‑81 (MQ=255) aaGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggccatcctgacggatggc < 2:1529930‑M1/99‑82 (MQ=255) aGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggccatcctgacggatggcc > 1:1477135‑M1/1‑17 (MQ=255) aGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggccatcctgacggatggcc > 1:1008486‑M1/1‑17 (MQ=255) aGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggccatcctgacggatggcc > 1:1017548‑M1/1‑17 (MQ=255) gCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggccatcctgacggatggcct > 1:1174173‑M1/1‑16 (MQ=255) gCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggccatcctgacggatggcct < 2:1595679‑M1/99‑84 (MQ=255) ccTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggccatcctgacggatggcctt > 2:1961765‑M1/1‑15 (MQ=255) ccTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggccatcctgacggatggcctt < 1:24671‑M1/99‑85 (MQ=255) ctccttATACTAACTTGAGCGAAACGGGAAGGTAAAAAGACAAAAAGTTGTTTTTAATACCTTTAAGTGATACCAGATGGCATTGCGCCATCTGGCaga < 1:1794529/95‑1 (MQ=255) ctccttATACTAACTTGAGCGAAACGGGAAGGTAAAAAGACAAAAAGTTGTTTTTAATACCTTTAAGTGATACCAGATGGCATTGCGCCATCTGGCaga < 2:779810/95‑1 (MQ=255) cttATACTAACTTGAGCGAAACGGGAAGGTAAAAAGACAAAAAGTTGTTTTTAATACCTTTAAGTGATACCAGATGGCATTGCGCCATCTGGCAGAGTg < 1:223860/98‑1 (MQ=255) tataCcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggccatcctgacggatggcctttttgcgtttc < 1:773486‑M1/99‑95 (MQ=255) tataCTAACTTGAGCGAAACGGGAAGGTAAAAAGACAAAAAGTTGTTTTTAATACCTTTAAGTGATACCAGATGGCATTGCGCCATCTGGCAGAGTGAt < 1:1687815/99‑1 (MQ=255) taCcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggccatcctgacggatggcctttttgcgtttcta > 2:1269466‑M1/1‑3 (MQ=255) taCcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggccatcctgacggatggcctttttgcgtttcta > 1:1230801‑M1/1‑3 (MQ=255) taCcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggccatcctgacggatggcctttttgcgtttcta < 1:1318965‑M1/99‑97 (MQ=255) taCcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggccatcctgacggatggcctttttgcgtttcta > 2:1355093‑M1/1‑3 (MQ=255) cccggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggccatcctgacggatggcctttttgcgtttctac < 1:311416‑M1/98‑98 (MQ=255) ccggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggccatcctgacggatggcctttttgcgtttctaca > 2:738282‑M1/1‑1 (MQ=255) ccggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggccatcctgacggatggcctttttgcgtttctaca > 1:657843‑M1/1‑1 (MQ=255) ccggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggccatcctgacggatggcctttttgcgtttctaca < 2:491388‑M1/99‑99 (MQ=255) cTAACTTGAGCGAAACGGGAAGGTAAAAAGACAAAAAGTTGTTTTTAATACCTTTAAGTGATACCAGATGGCATTGCGCCATCTGGCAGAGTGATTAAc > 1:431328/1‑99 (MQ=255) | GCCAATGCCAGCGCCAGACGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACTAACTTGAGCGAAACGGGAAGGTAAAAAGACAAAAAGTTGTTTTTAATACCTTTAAGTGATACCAGATGGCATTGCGCCATCTGGCAGAGTGATTAAC > NC_000913/807241‑807437 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |