| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC JC | NC_000913 | 4,542,330 | IS1 (–) +9 bp | 39.0% | coding (294‑302/597 nt) | fimE → | regulator for fimA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1978503 = | NA (NA) | 36 (0.340) | 31/176 | NT | 36.2% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 4542338 | 57 (0.590) | coding (302/597 nt) | fimE | regulator for fimA | |||||
| * | ? | NC_000913 | 3583428 = | NA (NA) | 37 (0.350) | 36/176 | NT | 36.8% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 4542330 = | 57 (0.590) | coding (294/597 nt) | fimE | regulator for fimA | |||||
GAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1978599‑1978503‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACGCTCATCAAAACGTAACGGGTGAACGGTAGAAAA < NC_000913/4542338‑4542241 GAAGTCGCTGACGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGg > 2:2457130/1‑98 AAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCG > 2:342683/1‑99 AGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCGT < 1:418804/99‑1 CTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCGTCAGTC > 2:690069/1‑99 CTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCGTCAGTC > 1:1901443/1‑99 CTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCGTCAGTC < 2:2012619/99‑1 CTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCGTCAGTC < 1:2315393/99‑1 TGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCGTCAGTCC > 2:950004/1‑99 GTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCGTCAGTCCGGTC < 2:1149679/99‑1 TTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCGTCAGTCCGGTCA > 2:1306120/1‑99 TCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCGTCAGTCCGGTCAGCG > 2:2325949/1‑99 CAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCGTCAGTCCGGTCAGCGC < 1:2458379/99‑1 ATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCGTCAGTCCGGTCAGCGCCTTT > 1:2409761/1‑99 CTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCA < 1:2567778/99‑1 CATGACAAAGTCATCGGGCATTATTTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGT > 2:1610814/1‑99 ACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCT > 2:2252785/1‑99 ACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCT < 2:1940270/99‑1 AAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGG < 2:2386241/99‑1 AAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGG > 2:1106543/1‑99 AGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGT > 1:550632/1‑99 GTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTC > 1:1573208/1‑99 TCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCC > 2:1955494/1‑99 TCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGC > 1:1960903/1‑99 GCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTC > 1:2814420/1‑99 TTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCAC < 1:662316/99‑1 TCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGC > 2:1885364/1‑99 ACATAAAACACTATCAATAAGTTGGAGTCATTACCGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCAC > 1:1724379/1‑99 ACATAAAACACTATCAATAAGTTGGAGTCATTACCGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCAC > 2:57763/1‑99 ACATAAAACACTATCAATAAGTTGGAGTCATTACCGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCAC > 2:56522/1‑99 CATAAAACACTATCAATAAGTTGGAGTCATTACCGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACG > 2:216518/1‑99 TAAAACACTATCAATAAGTTGGAGTCATTACCGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACGCT > 1:2138292/1‑99 TAAAACACTATCAATAAGTTGGAGTCATTACCGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACGCT > 1:180191/1‑99 AAAACACTATCAATAAGTTGGAGTCATTACCGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACGCTC < 1:2549724/99‑1 AAAACACTATCAATAAGTTGGAGTCATTACCGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACGCTC > 1:2141623/1‑99 AAACACTATCAATAAGTTGGAGTCATTACCGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACGCTCA > 2:1047605/1‑99 TCAATAAGTTGGAGTCATTACCGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACGCTCATCAAAACG < 2:241810/99‑1 AGTTGGAGTCATTACCGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACGCTCATCAAAACGTAACGG > 2:2779394/1‑99 GTTGGAGTCATTACCGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACGCTCATCAAAACGTAACGGG > 1:2626713/1‑99 TCATTACCGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACGCTCATCAAAACGTAACGGGTGAACGG > 1:2053298/1‑99 CCGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACGCTCATCAAAACGTAACGGGTGAACGGTAGAAA > 2:552/1‑99 CGCGTCAGACCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACGCTCATCAAAACGTAACGGGTGAACGGTAGAAAA < 2:2728948/99‑1 GAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1978599‑1978503‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACGCTCATCAAAACGTAACGGGTGAACGGTAGAAAA < NC_000913/4542338‑4542241 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |