New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3476003	118 (0.870)	10 (0.080)	10/164	NT	8.2%	coding (438/723 nt)	yheO	putative DNA‑binding transcriptional regulator YheO
	?	NC_000913	3478963 =	114 (0.910)					coding (1645/1806 nt)	kefB	K(+) : H(+) antiporter KefB

CGGCATTCACTTCTTCGATGGTGAACTCCAGCGTTTGGGTAACCAGATCTTCAACAGAAGAGGCAAAGTTGACGCTTGAACCGACATCCGGGGTTTCTGGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3475900‑3476003 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggcGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCCAGCTCTAACGCACTGGAGAATGTTTCACG  >  NC_000913/3478963‑3479059                                                                                                                                                                                                           CGGCATTCACTTCTTCGATGGTGAACTCCAGCGTTTGGGTAACCAGATCTTCAACAGAAGAGGCAAAGTTGACGCTTGAACCGACATCCGGGGTTTCTG                                                                                                        >  2:1061590/1‑99   GCATTCACTTCTTCGATGGTGAACTCCAGCGTTTGGGTAACCAGATCTTCAACAGAAGAGGCAAAGTTGACGCTTGAACCGACATCCGGGGTTTCTGGC                                                                                                      >  1:2792929/1‑99   GCATTCACTTCTTCGATGGTGAACTCCAGCGTTTGGGTAACCAGATCTTCAACAGAAGAGGCAAAGTTGACGCTTGAACCGACATCCGGGGTTTCTGGC                                                                                                      <  2:2097807/99‑1    CATTCACTTCTTCGATGGTGAACTCCAGCGTTTGGGTAACCAGATCTTCAACAGAAGAGGCAAAGTTGACGCTTGAACCGACATCCGGGGTTTCTGGCG                                                                                                     >  2:1189819/1‑99     ATTCACTTCTTCGATGGTGAACTCCAGCGTTTGGGTAACCAGATCTTCAACAGAAGAGGCAAAGTTGACGCTTGAACCGACATCCGGGGTTTCTGGCGG                                                                                                    >  2:679049/1‑99      TTCACTTCTTCGATGGTGAACTCCAGCGTTTGGGTAACCAGATCTTCAACAGAAGAGGCAAAGTTGACGCTTGAACCGACATCCGGGGTTTCTGGCGGC                                                                                                   >  2:1936043/1‑99      TTCACTTCTTCGATGGTGAACTCCAGCGTTTGGGTAACCAGATCTTCAACAGAAGAGGCAAAGTTGACGCTTGAACCGACATCCGGGGTTTCTGGCGGC                                                                                                   >  2:3160300/1‑99           TTCTTCGATGGTGAACTCCAGCGTTTGGGTAACCAGATCTTCAACAGAAGAGGCAAAGTTGACGCTTGAACCGACATCCGGGGTTTCTGGCGGCGAAAA                                                                                              <  1:2912753/99‑1               TCGATGGTGAACTCCAGCGTTTGGGTAACCAGATCTTCAACAGAAGAGGCAAAGTTGACGCTTGAACCGACATCCGGGGTTTCTGGCGGCGAAAATGCA                                                                                          >  2:943583/1‑99                 GATGGTGAACTCCAGCGTTTGGGTAACCAGATCTTCAACAGAAGAGGCAAAGTTGACGCTTGAACCGACATCCGGGGTTTCTGGCGGCGAAAATGCAGT                                                                                        <  1:1009509/99‑1                                  TTTGGGTAACCAGATCTTCAACAGAAGAGGCAAAGTTGACGCTTGAACCGACATCCGGGGTTTCTGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTG                                                                       >  2:109984/1‑99                                          ACCAGATCTTCAACAGAAGAGGCAAAGTTGACGCTTGAACCGACATCCGGGGTTTCTGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGAT                                                               <  2:196011/99‑1                                                          AAGAGGCAAAGTTGACGCTTGAACCGACATCCGGGGTTTCTGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGAC                                               >  2:1527832/1‑99                                                             AGGCAAAGTTGACGCTTGAACCGACATCCGGGGTTTCTGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAG                                            <  1:123013/99‑1                                                                 AAAGTTGACGCTTGAACCGACATCCGGGGTTTCTGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTC                                        <  1:361882/99‑1                                                                           CTTGAACCGACATCCGGGGTTTCTGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCCA                              <  2:1462558/99‑1                                                                                    ACATCCGGGGTTTCTGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCCAGCTCTAACG                     >  1:2807656/1‑99                                                                                      ATCCGGGGTTTCTGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCCAGCTCTAACGCA                   <  2:18587/99‑1                                                                                                   GGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCCAGCTCTAACGCACTGGAGAATGTTT      >  2:1582475/1‑99                                                                                                    GCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCCAGCTCTAACGCACTGGAGAATGTTTC     >  1:1090222/1‑99                                                                                                    GCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCCAGCTCTAACGCACTGGAGAATGTTTC     >  1:13282/1‑99                                                                                                     CGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCCAGCTCTAACGCACTGGAGAATGTTTCA    <  2:3048015/99‑1                                                                                                     CGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCCAGCTCTAACGCACTGGAGAATGTTTCA    <  2:628755/99‑1                                                                                                     CGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCCAGCTCTAACGCACTGGAGAATGTTTCA    <  1:2097842/99‑1                                                                                                     CGGCGAAAATGCAGTTGCGCTCGATGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCCAGCTCTAACGCACTGGAGAATGTTTCA    <  2:1167581/99‑1                                                                                                       GCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCCAGCTCTAACGCACTGGAGAATGTTTCACG  >  2:1396188/1‑99                                                                                                                                                                                                           CGGCATTCACTTCTTCGATGGTGAACTCCAGCGTTTGGGTAACCAGATCTTCAACAGAAGAGGCAAAGTTGACGCTTGAACCGACATCCGGGGTTTCTGGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3475900‑3476003 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggcGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCCAGCTCTAACGCACTGGAGAATGTTTCACG  >  NC_000913/3478963‑3479059

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.