mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,462,878 | 1 | . | C | 50.0% | 11.1 / 13.6 | 10 | intergenic (+232/‑134) | fadL/yfdF | long‑chain fatty acid outer membrane channel/bacteriophage T2 receptor/protein YfdF |
| * | NC_000913 | 1,458,741 | 0 | G | A | 41.7% | 10.0 / 24.2 | 24 | A160T (GCC→ACC) | paaG | putative ring 1,2‑epoxyphenylacetyl‑CoA isomerase (oxepin‑CoA forming) |
| * | NC_000913 | 2,462,878 | 2 | . | C | 40.0% | ‑2.5 / 14.0 | 10 | intergenic (+232/‑134) | fadL/yfdF | long‑chain fatty acid outer membrane channel/bacteriophage T2 receptor/protein YfdF |
| * | NC_000913 | 4,296,060 | 0 | C | T | 38.2% | 26.8 / 24.7 | 34 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 1,682,468 | 0 | C | . | 20.0% | 78.7 / 15.5 | 30 | coding (310/720 nt) | rstA | DNA‑binding transcriptional regulator RstA |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 22 (0.620) | 5 (0.150) | 5/246 | 2.6 | 13.6% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 43 (1.310) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 1207805 | 44 (1.250) | 4 (0.130) | 4/232 | 2.8 | 9.0% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 42 (1.360) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | 4542682 = | 22 (0.620) | 4 (0.120) | 4/246 | 2.9 | 11.2% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 43 (1.310) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 201584 | 48 (1.360) | 3 (0.090) | 3/242 | 3.3 | 7.1% | coding (614/1026 nt) | lpxD | UDP‑3‑O‑(3‑hydroxymyristoyl)glucosamine N‑acyltransferase |
| ? | NC_000913 | 883664 = | 35 (1.080) | intergenic (‑276/‑9) | ybjG/mdfA | undecaprenyl pyrophosphate phosphatase/multidrug efflux pump MdfA/Na(+):H(+) antiporter/K(+):H(+) antiporter | |||||