mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,604,344 | 0 | C | T | 37.8% | 119.8 / 30.3 | 90 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 4,153,493 | 0 | T | C | 30.0% | 144.9 / 69.5 | 100 | intergenic (‑395/+203) | ppc/argE | phosphoenolpyruvate carboxylase/acetylornithine deacetylase |
| * | NC_000913 | 2,817,916 | 0 | T | G | 28.4% | 124.9 / 115.9 | 109 | intergenic (‑56/+143) | argQ/argZ | tRNA‑Arg/tRNA‑Arg |
| * | NC_000913 | 4,296,060 | 0 | C | T | 27.9% | 113.4 / 45.2 | 69 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 2,207,793 | 0 | T | C | 26.5% | 74.7 / 27.8 | 50 | L700P (CTA→CCA) | yehM | putative YehN |
| * | NC_000913 | 646,747 | 0 | T | G | 26.5% | 137.4 / 22.6 | 69 | T255P (ACC→CCC) | citG | triphosphoribosyl‑dephospho‑CoA synthase |
| * | NC_000913 | 3,206,435 | 0 | C | T | 25.7% | 60.2 / 10.2 | 35 | intergenic (‑179/‑28) | ttdR/ttdA | DNA‑binding transcriptional activator Dan/L(+)‑tartrate dehydratase subunit alpha |
| * | NC_000913 | 2,326,450 | 0 | T | G | 25.4% | 112.5 / 17.8 | 55 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NC_000913 | 3,622,290 | 0 | G | C | 24.5% | 434.7 / 150.9 | 198 | R1033R (CGG→CGC) | rhsB | rhs element protein RhsB |
| * | NC_000913 | 3,622,761 | 0 | G | C | 21.7% | 585.6 / 190.0 | 273 | R1190R (CGG→CGC) | rhsB | rhs element protein RhsB |
| * | NC_000913 | 4,287,719 | 0 | T | A | 20.2% | 217.4 / 14.1 | 85 | intergenic (‑348/‑45) | acs/nrfA | acetyl‑CoA synthetase (AMP‑forming)/cytochrome c552 nitrite reductase |
| * | NC_000913 | 4,153,472 | 0 | C | A | 20.0% | 266.9 / 48.2 | 98 | intergenic (‑374/+224) | ppc/argE | phosphoenolpyruvate carboxylase/acetylornithine deacetylase |
| Marginal new junction evidence (lowest skew 10 of 18 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2568154 = | NA (NA) | 16 (0.210) | 12/228 | 3.2 | NA | noncoding (15/34 nt) | other | REP178a |
| ? | NC_000913 | = 3231366 | NA (NA) | noncoding (14/34 nt) | other | REP231c | |||||
| * | ? | NC_000913 | = 4542690 | 90 (0.980) | 15 (0.180) | 11/258 | 3.8 | 16.1% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 72 (0.840) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | 374922 = | NA (NA) | 15 (0.170) | 10/260 | 4.1 | NA | intergenic (+41/‑537) | mhpE/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| ? | NC_000913 | 377329 = | NA (NA) | intergenic (+18/+206) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | 4542682 = | 103 (1.130) | 12 (0.140) | 9/258 | 4.4 | 12.4% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 74 (0.870) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 374963 | NA (NA) | 5 (0.080) | 5/190 | 4.6 | NA | noncoding (33/34 nt) | other | REP31a |
| ? | NC_000913 | = 377487 | NA (NA) | intergenic (+176/+48) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | 340035 = | NA (NA) | 11 (0.120) | 8/274 | 4.9 | NA | coding (243/297 nt) | yahH | putative uncharacterized protein YahH |
| ? | NC_000913 | 377322 = | NA (NA) | intergenic (+11/+213) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | 374922 = | NA (NA) | 5 (0.070) | 3/202 | 5.7 | NA | intergenic (+41/‑537) | mhpE/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| ? | NC_000913 | 377430 = | NA (NA) | intergenic (+119/+105) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | 608007 = | NA (NA) | 4 (0.050) | 3/222 | 6.1 | 4.9% | noncoding (1/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 2515618 = | 79 (1.070) | intergenic (+175/+25) | insL‑3/pdeA | putative IS186/IS421 transposase/putative c‑di‑GMP phosphodiesterase PdeA | |||||
| * | ? | NC_000913 | = 780792 | 85 (0.930) | 4 (0.040) | 4/272 | 6.3 | 4.5% | noncoding (28/76 nt) | valT | tRNA‑Val |
| ? | NC_000913 | 780796 = | 85 (0.940) | noncoding (32/76 nt) | valT | tRNA‑Val | |||||
| * | ? | NC_000913 | 339849 = | NA (NA) | 4 (0.040) | 4/274 | 6.3 | NA | coding (57/297 nt) | yahH | putative uncharacterized protein YahH |
| ? | NC_000913 | 377322 = | NA (NA) | intergenic (+11/+213) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||