mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,568,504 | 0 | T | G | 40.3% | 228.7 / 20.0 | 131 | T6P (ACC→CCC) | mdtM | multidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter |
| * | NC_000913 | 4,604,344 | 0 | C | T | 39.0% | 131.5 / 63.8 | 100 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 4,296,060 | 0 | C | T | 31.6% | 182.3 / 97.9 | 114 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 2,001,918 | 0 | A | C | 31.4% | 216.7 / 33.2 | 103 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein |
| * | NC_000913 | 445,558 | 0 | A | C | 30.8% | 69.8 / 13.6 | 39 | V370G (GTA→GGA) | yajR | putative major facilitator superfamily transport protein YajR |
| * | NC_000913 | 1,825,061 | 0 | G | A | 23.1% | 112.4 / 11.3 | 52 | intergenic (‑124/+79) | ves/spy | HutD family protein Ves/ATP‑independent periplasmic chaperone |
| * | NC_000913 | 2,326,450 | 0 | T | G | 20.7% | 194.5 / 38.3 | 82 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| Marginal new junction evidence (lowest skew 10 of 17 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 781145 | 138 (1.180) | 9 (0.110) +39 bp |
8/198 | 4.6 | 8.5% | intergenic (+2/‑2) | valZ/lysY | tRNA‑Val/tRNA‑Lys |
| ? | NC_000913 | 2521046 = | 131 (1.120) | intergenic (+40/‑5) | valU/valX | tRNA‑Val/tRNA‑Val | |||||
| * | ? | NC_000913 | = 780841 | 167 (1.430) | 9 (0.110) +40 bp |
8/196 | 4.6 | 7.8% | intergenic (+1/‑2) | valT/lysW | tRNA‑Val/tRNA‑Lys |
| ? | NC_000913 | 2521046 = | 131 (1.120) | intergenic (+40/‑5) | valU/valX | tRNA‑Val/tRNA‑Val | |||||
| * | ? | NC_000913 | 2521046 = | 131 (1.120) | 9 (0.110) +38 bp |
8/200 | 4.7 | 10.3% | intergenic (+40/‑5) | valU/valX | tRNA‑Val/tRNA‑Val |
| ? | NC_000913 | = 2521251 | 85 (0.730) | intergenic (+3/‑2) | valY/lysV | tRNA‑Val/tRNA‑Lys | |||||
| * | ? | NC_000913 | 4542682 = | 94 (0.810) | 8 (0.070) | 7/258 | 6.0 | 7.4% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 113 (1.040) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | 608007 = | NA (NA) | 8 (0.080) | 5/224 | 6.3 | 8.2% | noncoding (1/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 609352 = | 89 (0.940) | intergenic (+175/+107) | insL‑2/entD | IS186/IS421 transposase/phosphopantetheinyl transferase EntD | |||||
| * | ? | NC_000913 | 375204 = | NA (NA) | 9 (0.080) +T |
7/274 | 6.3 | NA | noncoding (16/36 nt) | other | REP31f |
| ? | NC_000913 | 377351 = | NA (NA) | noncoding (16/37 nt) | other | REP32a | |||||
| * | ? | NC_000913 | 4373295 = | NA (NA) | 9 (0.080) | 5/256 | 6.8 | NA | noncoding (2/34 nt) | other | REP328b |
| ? | NC_000913 | 4374499 = | NA (NA) | noncoding (1/34 nt) | other | REP329a | |||||
| * | ? | NC_000913 | 315401 = | NA (NA) | 4 (0.040) | 4/250 | 7.2 | NA | noncoding (173/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 315627 = | NA (NA) | noncoding (399/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 1411899 = | 115 (0.990) | 3 (0.030) | 3/224 | 7.3 | 2.8% | coding (50/936 nt) | ttcA | tRNA cytosine(32) 2‑sulfurtransferase TtcA |
| ? | NC_000913 | = 1434958 | 117 (1.240) | pseudogene (51/51 nt) | ttcC | putative tRNA 2‑thiocytidine (s(2)C32) synthase | |||||
| * | ? | NC_000913 | 1944856 = | 126 (1.080) | 4 (0.040) | 4/262 | 7.4 | 3.7% | coding (501/1011 nt) | ruvB | Holliday junction branch migration complex subunit RuvB |
| ? | NC_000913 | 1945218 = | 88 (0.800) | coding (139/1011 nt) | ruvB | Holliday junction branch migration complex subunit RuvB | |||||