mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 650,809 | 0 | T | G | 32.6% | 88.9 / 19.3 | 49 | T350P (ACC→CCC) | citC | citrate lyase synthetase |
| * | NC_000913 | 4,604,344 | 0 | C | T | 31.4% | 153.4 / 53.0 | 102 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 4,111,747 | 0 | G | T | 29.3% | 101.8 / 20.1 | 41 | N156K (AAC→AAA) | yiiQ | DUF1454 domain‑containing protein YiiQ |
| * | NC_000913 | 4,296,060 | 0 | C | T | 28.7% | 163.9 / 71.6 | 94 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 2,001,918 | 0 | A | C | 28.3% | 112.5 / 18.5 | 53 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein |
| * | NC_000913 | 501,575 | 0 | A | C | 25.6% | 86.8 / 11.4 | 39 | V555G (GTG→GGG) | ybaL | putative transporter YbaL |
| * | NC_000913 | 3,926,366 | 0 | A | C | 22.9% | 245.1 / 17.3 | 97 | G30G (GGT→GGG) | mioC | flavoprotein MioC |
| * | NC_000913 | 1,491,103 | 0 | A | C | 22.8% | 189.2 / 11.9 | 79 | T68P (ACC→CCC) | cybB | cytochrome b561 |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 68 (0.680) | 10 (0.110) | 9/244 | 4.7 | 11.1% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 100 (1.130) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 4542690 | 91 (0.910) | 6 (0.060) | 6/258 | 6.0 | 5.7% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 112 (1.200) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | 374945 = | NA (NA) | 4 (0.040) +T |
4/274 | 7.1 | NA | noncoding (15/34 nt) | other | REP31a |
| ? | NC_000913 | 377408 = | NA (NA) | noncoding (15/34 nt) | other | REP32b | |||||
| * | ? | NC_000913 | 3609078 = | 145 (1.450) | 4 (0.040) | 3/254 | 7.3 | 3.1% | intergenic (‑82/‑139) | tusA/yhhQ | sulfur transfer protein TusA/putative queuosine precursor transporter |
| ? | NC_000913 | 3609203 = | 113 (1.230) | intergenic (‑207/‑14) | tusA/yhhQ | sulfur transfer protein TusA/putative queuosine precursor transporter | |||||
| * | ? | NC_000913 | = 98609 | 142 (1.420) | 3 (0.030) | 3/254 | 7.3 | 3.2% | coding (207/1245 nt) | ftsW | putative lipid II flippase FtsW |
| ? | NC_000913 | = 101684 | 50 (0.540) | coding (920/1476 nt) | murC | UDP‑N‑acetylmuramate‑‑L‑alanine ligase | |||||
| * | ? | NC_000913 | = 1071485 | 109 (1.140) | 4 (0.040) +CCA |
3/258 | 7.4 | 3.5% | coding (281/801 nt) | rutD | putative aminoacrylate hydrolase |
| ? | NC_000913 | 1071486 = | 114 (1.140) | coding (280/801 nt) | rutD | putative aminoacrylate hydrolase | |||||
| * | ? | NC_000913 | = 762769 | NA (NA) | 3 (0.030) | 3/260 | 7.4 | NA | noncoding (28/34 nt) | other | REP68a |
| ? | NC_000913 | = 762965 | NA (NA) | intergenic (+226/‑49) | sucB/sucC | dihydrolipoyltranssuccinylase/succinyl‑CoA synthetase subunit beta | |||||
| * | ? | NC_000913 | 381681 = | NA (NA) | 3 (0.030) | 3/258 | 7.4 | NA | noncoding (422/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381753 = | NA (NA) | noncoding (494/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 3857471 | 120 (1.200) | 3 (0.030) | 3/270 | 7.6 | 2.5% | coding (934/1494 nt) | yidJ | putative sulfatase/phosphatase |
| ? | NC_000913 | 3857475 = | 117 (1.200) | coding (930/1494 nt) | yidJ | putative sulfatase/phosphatase | |||||