mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 794,929 | G→T | intergenic (+7/‑160) | acrZ → / → modA | multidrug efflux pump accessory protein AcrZ/molybdate ABC transporter periplasmic binding protein |
| RA | 797,443 | G→T | R297L (CGG→CTG) | modC → | molybdate ABC transporter ATP binding subunit |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 1,233,327 | G→T | A464E (GCG→GAG) | nhaB ← | Na(+):H(+) antiporter NhaB |
| RA | 1,253,440 | C→A | S838I (AGC→ATC) | ycgV ← | putative autotransporter adhesin YcgV |
| RA | 1,390,202 | C→A | G133C (GGC→TGC) | mpaA ← | murein tripeptide amidase A |
| RA | 1,678,604 | G→T | A60S (GCA→TCA) | ydgH → | DUF1471 domain‑containing protein YdgH |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,067,274 | T→C | Q16Q (CAA→CAG) | insH‑6 ← | CP4‑44 prophage; IS5 transposase and trans‑activator |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,344,166 | G→T | R2R (CGG→AGG) | yfaL ← | putative autotransporter adhesin YfaL |
| RA | 2,456,193 | T→C | intergenic (‑547/+134) | yfcV ← / ← sixA | putative fimbrial protein YfcV/phosphohistidine phosphatase |
| RA | 2,598,092 | C→A | A258A (GCG→GCT) | bamC ← | outer membrane protein assembly factor BamC |
| RA | 3,053,387 | G→T | G44G (GGC→GGA) | ubiH ← | 2‑octaprenyl‑6‑methoxyphenol hydroxylase |
| RA | 3,191,032 | C→T | T134I (ACC→ATC) | yqiI → | putative fimbrial protein YqiI |
| RA | 3,224,019 | G→T | A463S (GCG→TCG) | ebgA → | evolved beta‑D‑galactosidase subunit alpha |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,634,831 | G→T | intergenic (‑373/‑10) | yhiL ← / → yhiM | putative uncharacterized protein YhiL/inner membrane protein with a role in acid resistance |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 4,049,431 | T→C | R822R (CGT→CGC) | polA → | DNA polymerase I |
| RA | 4,221,839 | C→A | G217W (GGG→TGG) | arpA ← | regulator of acetyl CoA synthetase |
| RA | 4,261,710 | C→A | S14R (AGC→AGA) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,316,959 | C→A | S87I (AGC→ATC) | phnM ← | RPnTP hydrolase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3102957 | 3104048 | 1092 | 24 [22] | [22] 24 | [mutY] | [mutY] |
| * | * | ÷ | NC_000913 | 3423765–3424234 | 3424530–3424239 | 6–766 | 25 [21] | [21] 24 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 80 (0.800) | 38 (0.430) | 31/244 | 1.3 | 30.7% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 101 (1.140) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | 1287362 = | 75 (0.750) | 53 (0.620) | 37/236 | 0.8 | 38.5% | intergenic (‑34/+176) | tyrV/tyrT | tRNA‑Tyr/tRNA‑Tyr |
| ? | NC_000913 | = 1287536 | 105 (1.230) | intergenic (‑208/+2) | tyrV/tyrT | tRNA‑Tyr/tRNA‑Tyr | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 145 (1.490) | 78/268 | 0.0 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 3363001 = | 161 (1.610) | 196 (1.980) | 85/274 | 0.0 | 70.5% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 4 (0.040) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 103 (1.030) | 58/276 | 0.3 | 92.8% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 8 (0.080) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||