mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,604,344 | 0 | C | T | 44.0% | 17.6 / 14.8 | 25 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 3,206,435 | 0 | C | T | 36.8% | 17.8 / 10.2 | 19 | intergenic (‑179/‑28) | ttdR/ttdA | DNA‑binding transcriptional activator Dan/L(+)‑tartrate dehydratase subunit alpha |
| Marginal new junction evidence (lowest skew 10 of 30 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 608006 | 30 (1.020) | 7 (0.240) | 7/224 | 2.1 | 18.9% | intergenic (+18/‑59) | hokE/insL‑2 | protein HokE/IS186/IS421 transposase |
| ? | NC_000913 | = 609351 | NA (NA) | noncoding (1345/1345 nt) | IS186 | repeat region | |||||
| * | ? | NC_000913 | = 555833 | 33 (0.910) | 8 (0.250) | 7/244 | 2.3 | 17.9% | coding (1223/1386 nt) | cysS | cysteine‑‑tRNA ligase |
| ? | NC_000913 | = 556784 | 44 (1.380) | coding (90/213 nt) | ybcJ | putative RNA‑binding protein YbcJ | |||||
| * | ? | NC_000913 | 4624787 = | 35 (0.970) | 8 (0.230) | 7/262 | 2.4 | 19.0% | coding (3/645 nt) | ytjB | protein Smp |
| ? | NC_000913 | 4624932 = | 35 (1.020) | coding (38/969 nt) | serB | phosphoserine phosphatase | |||||
| * | ? | NC_000913 | 15383 = | NA (NA) | 6 (0.180) | 5/260 | 3.0 | 19.7% | intergenic (+85/‑62) | dnaJ/insL‑1 | chaperone protein DnaJ/IS186/IS421 transposase |
| ? | NC_000913 | 16736 = | 26 (0.720) | intergenic (+179/+15) | insL‑1/hokC | IS186/IS421 transposase/protein HokC | |||||
| * | ? | NC_000913 | = 4628780 | NA (NA) | 4 (0.130) | 4/240 | 3.1 | NA | noncoding (37/37 nt) | other | REP354b |
| ? | NC_000913 | = 4633089 | NA (NA) | intergenic (+3/+144) | trpR/yjjX | DNA‑binding transcriptional repressor TrpR/ITPase/XTPase | |||||
| * | ? | NC_000913 | = 1879834 | 2 (0.060) | 5 (0.140) | 5/270 | 3.1 | 71.4% | coding (115/360 nt) | yeaR | DUF1971 domain‑containing protein YeaR |
| ? | NC_000913 | 2514274 = | NA (NA) | noncoding (2/1345 nt) | IS186 | repeat region | |||||
| * | ? | NC_000913 | 1397239 = | 35 (1.100) | 4 (0.130) | 4/238 | 3.1 | 10.4% | intergenic (+147/‑126) | insH‑4/ynaJ | IS5 transposase and trans‑activator/DUF2534 domain‑containing protein YnaJ |
| ? | NC_000913 | 1427599 = | NA (NA) | noncoding (1196/1196 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 374922 = | NA (NA) | 7 (0.270) | 3/202 | 3.1 | NA | intergenic (+41/‑537) | mhpE/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| ? | NC_000913 | 377430 = | NA (NA) | intergenic (+119/+105) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | 16736 = | 26 (0.720) | 8 (0.230) +TCAC |
5/268 | 3.1 | 24.1% | intergenic (+179/+15) | insL‑1/hokC | IS186/IS421 transposase/protein HokC |
| ? | NC_000913 | 608007 = | NA (NA) | noncoding (1/1345 nt) | IS186 | repeat region | |||||
| * | ? | NC_000913 | = 375246 | NA (NA) | 6 (0.190) +GAACGCCTTATCCGGT |
4/244 | 3.2 | NA | noncoding (13/34 nt) | other | REP31g |
| ? | NC_000913 | = 377491 | NA (NA) | noncoding (32/34 nt) | other | REP32d | |||||