mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 40.0% | 28.8 / 36.8 | 35 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 4,604,344 | 0 | C | T | 40.0% | 23.5 / 14.5 | 25 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 2,001,918 | 0 | A | C | 37.9% | 39.2 / 14.8 | 29 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein |
| * | NC_000913 | 4,111,747 | 0 | G | T | 28.6% | 68.9 / 11.5 | 28 | N156K (AAC→AAA) | yiiQ | DUF1454 domain‑containing protein YiiQ |
| * | NC_000913 | 1,315,936 | 0 | T | A | 20.4% | 107.7 / 10.4 | 44 | K34* (AAA→TAA) | yciG | protein YciG |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3268572 = | 53 (0.990) | 9 (0.170) | 5/274 | 4.5 | 14.5% | coding (158/1188 nt) | yhaC | uncharacterized protein YhaC |
| ? | NC_000913 | 3365556 = | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 4542682 = | 41 (0.760) | 5 (0.100) | 3/258 | 5.2 | 12.6% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 31 (0.610) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 102308 | 25 (0.460) | 3 (0.060) | 3/274 | 5.4 | 5.7% | coding (76/921 nt) | ddlB | D‑alanine‑‑D‑alanine ligase B |
| ? | NC_000913 | = 2450135 | 75 (1.400) | coding (456/540 nt) | yfcP | putative fimbrial protein YfcP | |||||