| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,279,236 | Δ198 bp | coding (328‑525/1191 nt) | bcr ← | multidrug efflux pump Bcr |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2279236 | 2279433 | 198 | 24 [0] | [0] 23 | bcr | multidrug efflux pump Bcr |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2279235 | 0 (0.000) | 23 (1.170) | 20/264 | 0.1 | 100% | coding (526/1191 nt) | bcr | multidrug efflux pump Bcr |
| ? | NC_000913 | 2279434 = | 0 (0.000) | coding (327/1191 nt) | bcr | multidrug efflux pump Bcr | |||||
CTGGCAAGCATGTAGCTCAGGACACGTTTATGGCGGAACAGCGCCGCAAAGTTACCAATAGTGGTACGAATGTGAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2279096‑2279235‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccagCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGCACACGCCACCGCGGCGGCGGCAAACACCAGCGTACCGCCGAGCACCACCGGCTTACGCCCGAAGCTGTCTGCCATCGGCC > NC_000913/2279434‑2279564 CTGGCAAGCATGTAGCTCAGGACACGTTTATGGCGGAACAGCGCCGCAAAGTTACCAATAGTGGTACGAATGTGAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCAG > 1:24248/1‑140 AGCTCAGGACACGTTTATGGCGGAACAGCGCCGCAAAGTTACCAATAGTGGTACGAATGTGAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCAGCCCGTGGAAGAAA > 2:35901/1‑140 AGCTCAGGACACGTTTATGGCGGAACAGCGCCGCAAAGATACCAATAGTGGTAAGAATGTGAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCAGCCCGTGGAAGAAA > 2:100686/1‑140 AGGACACGTTTATGGCGGAACAGCGCCGCAAAGTTACCAATAGTGGTACGAATGTGAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCAGCCCGTGGAAGAAACGCAT < 2:341111/140‑1 GAACAGCGCCGCAAAGTTACCAATAGTGGTACGAATGTGAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGA > 2:326095/1‑140 GAACAGCGCCGCAAAGTTACCAATAGTGGTACGAATGTGAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCAGCCCGTGGAAGAAACGCATC > 1:82902/1‑124 GAACAGCGCCGCAAAGTTACCAATAGTGGTACGAATGTGAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCAGCCCGTGGAAGAAACGCATC < 2:82902/124‑1 AAAGTTACCAATAGTGGTACGAATGTGAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCA < 1:57171/140‑1 TACCAATAGTGGTACGAATGTGAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGCA < 1:326095/140‑1 TACCAATAGTGGTACGAATGTGAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGCA < 2:24248/140‑1 TGGTACGAATGTGAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCAGCACGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGCACACGCCACC > 1:305047/1‑140 GTGAAATGGCTGACTACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGCACACGCCACCGCGGCGGCGG > 1:237173/1‑140 GAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGCACACGCCACCGCGGCGGCGGCA < 1:35901/140‑1 GCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGCACACGCCACCGCGGCGGCGGCAAACACC > 2:102690/1‑140 GACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGCACACGCCACCGCGGCGGCGGCAAACACCAGCGTA > 1:254817/1‑140 TCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGCACACGCCACCGCGGCGGCGGCAAACACCAGCGTACCGCC > 1:141305/1‑140 GTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGCACACGCCACCGCGGCGGCGGCAAACACCAGCGTACCGCCGAGC > 1:8795/1‑140 TCTTTAATCAGGAAGAAAATCATTGCCGAAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGCACACGCCACCGCGGCGGCGGCAAACACCAGCGTACCGCCGAGCACCACCGGCTT > 1:78611/1‑140 TTTAATCAGGAAGAAAATCATTGCCGAAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGCACACGCCACCGCGGCGGCGGCAAACACCAGCGTACCGCCGAGCACCACCGGCTTAC > 1:247978/1‑140 TCAGGAAGAAAATCATTGCCGAAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGCACACGCCACCGCGGCGGCGGCAAACACCAGCGTACCGCCGAGCACCACCGGCTTACGCCCG > 2:36119/1‑140 GAAGAAAATCATTGCCGAAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGCACACGCCACCGCGGCGGCGGCAAACACCAGCGTACCGCCGAGCACCACCGGCTTACGCCCGAAGC > 1:163312/1‑140 AAAATCATTGCCGAAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGCACACGCCACCGCGGCGGCGGCAAACACCAGCGTACCGCCGAGCACCACCGGCTTACGCCCGAAGCTGTC < 2:254817/140‑1 TTGCCGAAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGCACACGCCACCGCGGCGGCGGCAAACACCAGCGTACCGCCGAGCACCACCGGCTTACGCCCGAAGCTGTCTGCCATC > 1:309888/1‑140 CGAAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGCACACGCCACCGCGGCGGCGGCAAACACCAGCGTACCGCCGAGCACCACCGGCTTACGCCCGAAGCTGTCTGCCATCGGCC < 2:141305/140‑1 CTGGCAAGCATGTAGCTCAGGACACGTTTATGGCGGAACAGCGCCGCAAAGTTACCAATAGTGGTACGAATGTGAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2279096‑2279235‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccagCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGCACACGCCACCGCGGCGGCGGCAAACACCAGCGTACCGCCGAGCACCACCGGCTTACGCCCGAAGCTGTCTGCCATCGGCC > NC_000913/2279434‑2279564 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |