| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,279,236 | Δ198 bp | coding (328‑525/1191 nt) | bcr ← | multidrug efflux pump Bcr |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2279236 | 2279433 | 198 | 24 [0] | [0] 23 | bcr | multidrug efflux pump Bcr |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2279235 | 0 (0.000) | 23 (1.170) | 20/264 | 0.1 | 100% | coding (526/1191 nt) | bcr | multidrug efflux pump Bcr |
| ? | NC_000913 | 2279434 = | 0 (0.000) | coding (327/1191 nt) | bcr | multidrug efflux pump Bcr | |||||
CTGGCAAGCATGTAGCTCAGGACACGTTTATGGCGGAACAGCGCCGCAAAGTTACCAATAGTGGTACGAATGTGAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCAGAATCGCCGCTAATGCCAGGATCCAGAAGATGTAATGCCAGCTCAGCCACACCAGCACCCAGCCGCCAACTATCGGTGCCATCAGCGGTGCAATGGTTGTCACCAGCATGACAAACGACATCATCCGCGAGA > NC_000913/2279096‑2279366 | cTGGCAAGCATGTAGCTCAGGACACGTTTATGGCGGAACAGCGCCGCAAAGTTACCAATAGTGGTACGAATGTGAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCAG > 1:24248‑M1/1‑140 (MQ=255) aGCTCAGGACACGTTTATGGCGGAACAGCGCCGCAAAGTTACCAATAGTGGTACGAATGTGAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCAGcccgtggaagaaa > 2:35901‑M1/1‑127 (MQ=255) aGCTCAGGACACGTTTATGGCGGAACAGCGCCGCAAAGATACCAATAGTGGTAAGAATGTGAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCAGcccgtggaagaaa > 2:100686‑M1/1‑127 (MQ=255) aGGACACGTTTATGGCGGAACAGCGCCGCAAAGTTACCAATAGTGGTACGAATGTGAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCAGcccgtggaagaaacgcat < 2:341111‑M1/140‑19 (MQ=255) gAACAGCGCCGCAAAGTTACCAATAGTGGTACGAATGTGAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCAGcccgtggaagaaacgcatcacaatcagctgatcga > 2:326095‑M1/1‑105 (MQ=255) gAACAGCGCCGCAAAGTTACCAATAGTGGTACGAATGTGAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCAGcccgtggaagaaacgcatc > 1:82902‑M1/1‑105 (MQ=255) gAACAGCGCCGCAAAGTTACCAATAGTGGTACGAATGTGAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCAGcccgtggaagaaacgcatc < 2:82902‑M1/124‑20 (MQ=255) aaaGTTACCAATAGTGGTACGAATGTGAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCAGcccgtggaagaaacgcatcacaatcagctgatcgatggtgtttgcca < 1:57171‑M1/140‑48 (MQ=255) tACCAATAGTGGTACGAATGTGAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCAGcccgtggaagaaacgcatcacaatcagctgatcgatggtgtttgccaacgca < 1:326095‑M1/140‑53 (MQ=255) tACCAATAGTGGTACGAATGTGAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCAGcccgtggaagaaacgcatcacaatcagctgatcgatggtgtttgccaacgca < 2:24248‑M1/140‑53 (MQ=255) tGGTACGAATGTGAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCAGcacgtggaagaaacgcatcacaatcagctgatcgatggtgtttgccaacgcacacgccacc > 1:305047‑M1/1‑79 (MQ=255) gtgAAATGGCTGACTACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCAGcccgtggaagaaacgcatcacaatcagctgatcgatggtgtttgccaacgcacacgccaccgcggcggcgg > 1:237173‑M1/1‑69 (MQ=255) gAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCAGcccgtggaagaaacgcatcacaatcagctgatcgatggtgtttgccaacgcacacgccaccgcggcggcggca < 1:35901‑M1/140‑74 (MQ=255) gCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCAGcccgtggaagaaacgcatcacaatcagctgatcgatggtgtttgccaacgcacacgccaccgcggcggcggcaaacacc > 2:102690‑M1/1‑61 (MQ=255) gacgCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCAGcccgtggaagaaacgcatcacaatcagctgatcgatggtgtttgccaacgcacacgccaccgcggcggcggcaaacaccagcgta > 1:254817‑M1/1‑55 (MQ=255) tCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCAGcccgtggaagaaacgcatcacaatcagctgatcgatggtgtttgccaacgcacacgccaccgcggcggcggcaaacaccagcgtaccgcc > 1:141305‑M1/1‑50 (MQ=255) gtggtAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCAGcccgtggaagaaacgcatcacaatcagctgatcgatggtgtttgccaacgcacacgccaccgcggcggcggcaaacaccagcgtaccgccgagc > 1:8795‑M1/1‑46 (MQ=255) tCTTTAATCAGGAAGAAAATCATTGCCGAAGCCAGcccgtggaagaaacgcatcacaatcagctgatcgatggtgtttgccaacgcacacgccaccgcggcggcggcaaacaccagcgtaccgccgagcaccaccggctt > 1:78611‑M1/1‑35 (MQ=255) tttAATCAGGAAGAAAATCATTGCCGAAGCCAGcccgtggaagaaacgcatcacaatcagctgatcgatggtgtttgccaacgcacacgccaccgcggcggcggcaaacaccagcgtaccgccgagcaccaccggcttac > 1:247978‑M1/1‑33 (MQ=255) tCAGGAAGAAAATCATTGCCGAAGCCAGcccgtggaagaaacgcatcacaatcagctgatcgatggtgtttgccaacgcacacgccaccgcggcggcggcaaacaccagcgtaccgccgagcaccaccggcttacgcccg > 2:36119‑M1/1‑28 (MQ=255) gaagaaAATCATTGCCGAAGCCAGcccgtggaagaaacgcatcacaatcagctgatcgatggtgtttgccaacgcacacgccaccgcggcggcggcaaacaccagcgtaccgccgagcaccaccggcttacgcccgaagc > 1:163312‑M1/1‑24 (MQ=255) aaaaTCATTGCCGAAGCCAGcccgtggaagaaacgcatcacaatcagctgatcgatggtgtttgccaacgcacacgccaccgcggcggcggcaaacaccagcgtaccgccgagcaccaccggcttacgcccgaagctgtc < 2:254817‑M1/140‑121 (MQ=255) ttGCCGAAGCCAGcccgtggaagaaacgcatcacaatcagctgatcgatggtgtttgccaacgcacacgccaccgcggcggcggcaaacaccagcgtaccgccgagcaccaccggcttacgcccgaagctgtctgccatc > 1:309888‑M1/1‑13 (MQ=255) cGAAGCCAGcccgtggaagaaacgcatcacaatcagctgatcgatggtgtttgccaacgcacacgccaccgcggcggcggcaaacaccagcgtaccgccgagcaccaccggcttacgcccgaagctgtctgccatcggcc < 2:141305‑M1/140‑132 (MQ=255) | CTGGCAAGCATGTAGCTCAGGACACGTTTATGGCGGAACAGCGCCGCAAAGTTACCAATAGTGGTACGAATGTGAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCAGAATCGCCGCTAATGCCAGGATCCAGAAGATGTAATGCCAGCTCAGCCACACCAGCACCCAGCCGCCAACTATCGGTGCCATCAGCGGTGCAATGGTTGTCACCAGCATGACAAACGACATCATCCGCGAGA > NC_000913/2279096‑2279366 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |