mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,604,344 | 0 | C | T | 42.4% | 34.1 / 20.2 | 33 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 3,206,435 | 0 | C | T | 35.0% | 23.1 / 10.6 | 20 | intergenic (‑179/‑28) | ttdR/ttdA | DNA‑binding transcriptional activator Dan/L(+)‑tartrate dehydratase subunit alpha |
| * | NC_000913 | 445,558 | 0 | A | C | 31.0% | 37.0 / 15.9 | 29 | V370G (GTA→GGA) | yajR | putative major facilitator superfamily transport protein YajR |
| * | NC_000913 | 4,296,060 | 0 | C | T | 28.3% | 87.2 / 31.7 | 46 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 501,575 | 0 | A | C | 27.8% | 60.6 / 12.6 | 36 | V555G (GTG→GGG) | ybaL | putative transporter YbaL |
| * | NC_000913 | 646,747 | 0 | T | G | 27.0% | 61.3 / 16.3 | 37 | T255P (ACC→CCC) | citG | triphosphoribosyl‑dephospho‑CoA synthase |
| * | NC_000913 | 501,564 | 0 | A | C | 25.7% | 61.0 / 14.9 | 35 | *559E (TAA→GAA) | ybaL | putative transporter YbaL |
| * | NC_000913 | 646,760 | 0 | T | C | 23.7% | 74.6 / 12.5 | 38 | K250K (AAA→AAG) | citG | triphosphoribosyl‑dephospho‑CoA synthase |
| * | NC_000913 | 4,568,512 | 0 | C | A | 23.7% | 104.2 / 15.5 | 38 | R3L (CGT→CTT) | mdtM | multidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4542682 = | 45 (0.920) | 7 (0.150) | 7/258 | 3.2 | 15.0% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 37 (0.810) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 4542690 | 43 (0.880) | 7 (0.150) | 6/258 | 3.5 | 15.5% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 36 (0.790) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 2405937 | 67 (1.370) | 4 (0.080) | 4/274 | 4.3 | 5.9% | coding (705/939 nt) | lrhA | DNA‑binding transcriptional dual regulator LrhA |
| ? | NC_000913 | 2405949 = | 61 (1.250) | coding (693/939 nt) | lrhA | DNA‑binding transcriptional dual regulator LrhA | |||||
| * | ? | NC_000913 | = 3965960 | 39 (0.790) | 3 (0.060) | 3/276 | 4.8 | 7.1% | coding (200/330 nt) | trxA | thioredoxin 1 |
| ? | NC_000913 | 3965965 = | 39 (0.790) | coding (205/330 nt) | trxA | thioredoxin 1 | |||||