mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 650,809 | 0 | T | G | 43.2% | 29.6 / 18.6 | 37 | T350P (ACC→CCC) | citC | citrate lyase synthetase |
| * | NC_000913 | 4,604,344 | 0 | C | T | 39.6% | 62.6 / 32.3 | 53 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 4,568,504 | 0 | T | G | 33.9% | 88.5 / 11.4 | 57 | T6P (ACC→CCC) | mdtM | multidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter |
| * | NC_000913 | 4,429,984 | 0 | T | G | 30.2% | 69.0 / 17.5 | 43 | L41V (TTG→GTG) | cycA | serine/alanine/glycine/cycloserine:H(+)symporter |
| * | NC_000913 | 3,206,435 | 0 | C | T | 29.6% | 41.8 / 11.9 | 27 | intergenic (‑179/‑28) | ttdR/ttdA | DNA‑binding transcriptional activator Dan/L(+)‑tartrate dehydratase subunit alpha |
| * | NC_000913 | 332,991 | 0 | G | T | 28.9% | 103.9 / 21.3 | 45 | L207F (TTG→TTT) | pdeL | DNA‑binding transcriptional activator/c‑di‑GMP phosphodiesterase PdeL |
| * | NC_000913 | 29,496 | 0 | T | A | 27.0% | 76.4 / 15.8 | 37 | intergenic (+301/‑155) | dapB/carA | 4‑hydroxy‑tetrahydrodipicolinate reductase/carbamoyl phosphate synthetase subunit alpha |
| * | NC_000913 | 2,326,450 | 0 | T | G | 26.1% | 79.2 / 19.9 | 46 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NC_000913 | 4,287,719 | 0 | T | A | 23.9% | 102.6 / 15.5 | 46 | intergenic (‑348/‑45) | acs/nrfA | acetyl‑CoA synthetase (AMP‑forming)/cytochrome c552 nitrite reductase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 55 (0.980) | 11 (0.210) | 11/256 | 2.8 | 16.6% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 59 (1.120) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 374963 | NA (NA) | 3 (0.080) | 3/188 | 4.3 | NA | noncoding (33/34 nt) | other | REP31a |
| ? | NC_000913 | = 377487 | NA (NA) | intergenic (+176/+48) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | = 3129024 | 63 (1.120) | 5 (0.100) | 4/252 | 4.9 | 9.3% | coding (753/765 nt) | glcC | DNA‑binding transcriptional dual regulator GlcC |
| ? | NC_000913 | = 3129141 | 40 (0.770) | coding (1075/1173 nt) | yghO | putative DNA‑binding transcriptional regulator YghO | |||||
| * | ? | NC_000913 | = 2981991 | 60 (1.070) | 3 (0.050) | 3/268 | 5.5 | 4.9% | coding (192/1419 nt) | araE | arabinose:H(+) symporter |
| ? | NC_000913 | 2981995 = | 58 (1.060) | coding (188/1419 nt) | araE | arabinose:H(+) symporter | |||||
| * | ? | NC_000913 | = 225397 | NA (NA) | 3 (0.050) | 3/268 | 5.5 | NA | noncoding (17/77 nt) | ileV | tRNA‑Ile |
| ? | NC_000913 | 225401 = | NA (NA) | noncoding (21/77 nt) | ileV | tRNA‑Ile | |||||
| * | ? | NC_000913 | 1541977 = | 36 (0.640) | 3 (0.050) | 3/272 | 5.6 | 6.2% | coding (614/3741 nt) | narZ | nitrate reductase Z subunit alpha |
| ? | NC_000913 | = 4406770 | 55 (0.990) | coding (117/2442 nt) | rnr | RNase R | |||||