mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,111,747 | 0 | G | T | 53.3% | ‑1.3 / 23.5 | 15 | N156K (AAC→AAA) | yiiQ | DUF1454 domain‑containing protein YiiQ |
| * | NC_000913 | 2,001,918 | 0 | A | C | 44.0% | 14.3 / 18.3 | 25 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein |
| * | NC_000913 | 4,296,060 | 0 | C | T | 23.1% | 52.0 / 10.8 | 26 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 33 (0.820) | 6 (0.160) | 5/258 | 2.1 | 17.2% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 27 (0.720) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 1611948 | 1185 (29.570) | 5 (0.130) | 5/274 | 2.3 | 0.42% | intergenic (‑94/+18) | dgcF/yneG | putative diguanylate cyclase DgcF/conserved protein YneG |
| ? | NC_000913 | 1611954 = | 1197 (30.090) | intergenic (‑100/+12) | dgcF/yneG | putative diguanylate cyclase DgcF/conserved protein YneG | |||||
| * | ? | NC_000913 | = 1612647 | 904 (22.560) | 5 (0.130) | 4/274 | 2.5 | 0.55% | coding (605/927 nt) | glsB | glutaminase 2 |
| ? | NC_000913 | 1612651 = | 897 (22.550) | coding (601/927 nt) | glsB | glutaminase 2 | |||||
| * | ? | NC_000913 | 4542682 = | 33 (0.820) | 3 (0.080) | 3/258 | 2.8 | 9.4% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 27 (0.720) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 1638195 | 1250 (31.200) | 3 (0.080) | 3/270 | 2.9 | 0.25% | coding (59/66 nt) | ynfR | Qin prophage; protein YnfR |
| ? | NC_000913 | 1638199 = | 1195 (30.490) | coding (55/66 nt) | ynfR | Qin prophage; protein YnfR | |||||
| * | ? | NC_000913 | = 1630799 | 1288 (32.150) | 3 (0.080) | 3/274 | 2.9 | 0.23% | coding (115/1461 nt) | ydfI | putative oxidoreductase YdfI |
| ? | NC_000913 | 1630803 = | 1326 (33.340) | coding (111/1461 nt) | ydfI | putative oxidoreductase YdfI | |||||