mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | BN000925 | 31,939 | 0 | C | G | 69.3% | 172.9 / 143.6 | 125 | P88R (CCG→CGG) ‡ | upf31.7 | hypothetical protein |
| * | BN000925 | 31,940 | 0 | G | C | 68.5% | 171.7 / 154.1 | 127 | P88P (CCG→CCC) ‡ | upf31.7 | hypothetical protein |
| * | BN000925 | 31,941 | 0 | C | G | 68.5% | 173.4 / 154.9 | 127 | P89A (CCT→GCT) | upf31.7 | hypothetical protein |
| * | BN000925 | 8,771 | 0 | C | G | 58.6% | 77.9 / 272.6 | 162 | A457G (GCA→GGA) ‡ | tnpA | Tn1 transposase |
| * | BN000925 | 8,772 | 0 | A | C | 58.6% | 349.8 / 261.4 | 162 | coding (1371/3006 nt) | tnpA | Tn1 transposase |
| * | BN000925 | 8,770 | 0 | G | C | 58.4% | 71.1 / 271.7 | 162 | A457P (GCA→CCA) ‡ | tnpA | Tn1 transposase |
| * | BN000925 | 8,767 | 1 | . | C | 41.4% | 43.2 / inf | 162 | coding (1366/3006 nt) | tnpA | Tn1 transposase |
| * | NC_000913 | 4,168,221 | 0 | T | C | 34.1% | 131.4 / 89.0 | 86 | intergenic (+21/‑151) | rrsB/gltT | 16S ribosomal RNA/tRNA‑Glu |
| * | NC_000913 | 4,168,215 | 0 | A | T | 32.6% | 141.3 / 91.1 | 86 | intergenic (+15/‑157) | rrsB/gltT | 16S ribosomal RNA/tRNA‑Glu |
| * | BN000925 | 31,941 | 1 | . | G | 31.5% | 167.1 / 193.0 | 127 | coding (265/420 nt) | upf31.7 | hypothetical protein |
| * | BN000925 | 31,938 | 0 | C | . | 30.6% | 326.5 / 140.2 | 124 | coding (262/420 nt) | upf31.7 | hypothetical protein |
| * | NC_000913 | 4,168,475 | 0 | G | T | 25.8% | 126.9 / 49.1 | 62 | intergenic (+28/‑166) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA |
| * | NC_000913 | 4,168,476 | 0 | A | G | 25.8% | 118.4 / 44.2 | 62 | intergenic (+29/‑165) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA |
| * | NC_000913 | 4,168,472 | 0 | G | A | 25.0% | 118.9 / 41.9 | 64 | intergenic (+25/‑169) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA |
| * | NC_000913 | 4,296,060 | 0 | C | T | 23.5% | 62.3 / 15.2 | 34 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1396308 | NA (NA) | 6 (0.210) | 6/406 | 2.4 | 14.4% | noncoding (265/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 1428543 = | 37 (1.230) | noncoding (252/1196 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 4542682 = | 30 (1.000) | 4 (0.140) | 4/402 | 3.0 | 12.8% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 26 (0.900) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | 704375 = | 35 (1.160) | 3 (0.100) | 3/404 | 3.4 | 8.3% | coding (432/1947 nt) | nagE | N‑acetylglucosamine specific PTS enzyme IIABC component |
| ? | NC_000913 | 704405 = | 33 (1.140) | coding (462/1947 nt) | nagE | N‑acetylglucosamine specific PTS enzyme IIABC component | |||||
| * | ? | NC_000913 | 381292 = | NA (NA) | 4 (0.140) | 3/402 | 3.4 | NA | noncoding (33/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381312 = | NA (NA) | noncoding (53/1331 nt) | IS2 | repeat region | |||||
| * | ? | BN000925 | = 6981 | 161 (1.000) | 11 (0.070) | 8/400 | 10.9 | 6.9% | noncoding (1490/4949 nt) | transposon:Tn1 | repeat region |
| ? | BN000925 | = 7020 | 143 (0.940) | noncoding (1529/4949 nt) | transposon:Tn1 | repeat region | |||||
| * | ? | BN000925 | 27691 = | 171 (1.070) | 12 (0.080) | 7/402 | 11.5 | 6.8% | coding (26/1587 nt) | trbL | TrbL protein |
| ? | BN000925 | 27799 = | 163 (1.060) | coding (134/1587 nt) | trbL | TrbL protein | |||||
| * | ? | BN000925 | = 6854 | 190 (1.190) | 6 (0.040) | 6/400 | 12.0 | 3.4% | noncoding (1363/4949 nt) | transposon:Tn1 | repeat region |
| ? | BN000925 | = 6901 | 163 (1.070) | noncoding (1410/4949 nt) | transposon:Tn1 | repeat region | |||||
| * | ? | BN000925 | 47926 = | 168 (1.050) | 4 (0.030) | 4/404 | 13.3 | 2.4% | coding (570/1908 nt) | traG | TraG protein |
| ? | BN000925 | 47954 = | 162 (1.050) | coding (542/1908 nt) | traG | TraG protein | |||||
| * | ? | BN000925 | 45093 = | 176 (1.100) | 3 (0.020) | 3/404 | 14.0 | 1.7% | coding (951/2214 nt) | traE | TraE putative helicase |
| ? | BN000925 | 45154 = | 181 (1.170) | coding (890/2214 nt) | traE | TraE putative helicase | |||||