| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3641246 | 659 (1.250) | 170 (0.340) +AGC |
12/106 | NT | 21.0% | intergenic (‑98/‑177) | dinQ/agrA | UV‑inducible membrane toxin, DinQ‑AgrB type I toxin‑antitoxin system/Inactive antisense sRNA |
| ? | CP009273 | 3641449 = | 696 (1.320) | noncoding (27/84 nt) | agrA | Inactive antisense sRNA | |||||
Only 100 of 176 total aligned reads displayed.
TCCGCTTACTCATCCACTGCCTGTCA‑CGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3641181‑3641246‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCC > CP009273/3641449‑3641510 ||| TCCGCTTACTCATCCACTGCCTGTCA‑CGTCTCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCAG < 1:34108294/68‑1 CATCCACTGCCTGTCACCGTCGAATTTCTCATTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCA < 1:18365320/68‑1 CCACTGCCTGTCA‑CGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCCACCgt > 1:26991034/1‑66 CACTGCCTGTCA‑CGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAAC < 1:27585621/68‑1 CCTGTCT‑CGTAGCATGTGTCTTTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCA < 1:26165413/58‑1 CCTGTCA‑CGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCCTCCCACTCAGG > 1:38478713/1‑68 CTGTCA‑CTTCGCATTTCTCATTGTTAGATAAGAACTCTCTCACTCCTGCCAGAGCCACCAACTCAGG < 1:11473282/67‑1 TCA‑CGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCAGCCAGAG > 1:17456674/1‑51 A‑CGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGG > 1:403487/1‑63 GGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCCACCAATTAAGGCCTGGAAA > 1:33176604/1‑68 GGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCCACT > 1:5510245/1‑56 CGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCCACAGTCACAGGGCTGGAAAGT > 1:3396339/1‑68 tCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGT < 1:8072537/66‑1 TGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCCACCAAATAAGGGCTGGAAAGTAAAAAACCGAC > 1:21182317/1‑67 TGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCAGCAACTCAGGGCTGGAAAGTAAAAAACCGAC > 1:19041200/1‑67 TGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACG < 1:11708567/68‑1 TGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGAC < 1:40331717/67‑1 TGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGAC > 1:35816761/1‑67 GTTAGATAAGAACTCTCTCACTCCAGCCAGAGCAACCAAATCAGGCCAGGAAAGTAAAAAACCGACGC > 1:10196663/1‑68 TAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAA > 1:22512153/1‑68 GATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAG > 1:23358849/1‑68 ATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAG > 1:23271444/1‑67 TAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTC < 1:29490687/68‑1 AAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCG > 1:28173061/1‑68 AAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCG > 1:28352652/1‑68 AAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCG > 1:9195072/1‑68 AAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCG > 1:28402269/1‑68 AAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCG > 1:32469861/1‑68 AAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCG > 1:10028721/1‑68 AAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCG > 1:30783353/1‑68 AAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCG > 1:33052974/1‑68 AAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCG > 1:2979256/1‑68 AAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCG > 1:5888949/1‑68 AAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCG > 1:34786790/1‑68 AAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCG > 1:37267224/1‑68 AAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCG > 1:554672/1‑68 AAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCG > 1:39045762/1‑68 AAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCG > 1:4697282/1‑68 AAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCG > 1:23744379/1‑68 AAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCG > 1:12419660/1‑68 AAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCG > 1:1369239/1‑68 AAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCG > 1:15995253/1‑68 AAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCG > 1:16707026/1‑68 AAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCG > 1:20857687/1‑68 AAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCG > 1:21307721/1‑68 AAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCG > 1:21810235/1‑68 AAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCG > 1:21316302/1‑68 AAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCG > 1:22121458/1‑68 AAGAACTCTCTCACTCCAGCCAGAGACACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCG > 1:16116283/1‑68 tcACTATCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGT < 1:40662153/66‑1 AACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTT > 1:14801491/1‑68 AACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTT > 1:7932538/1‑68 AACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTT > 1:27097192/1‑68 tCTCTCTCACTCCAGGCTTAGCCACCTAATCATGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGT < 1:36192964/65‑1 ACTCTCTCTCTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTT > 1:8582153/1‑68 ACTCTCTCACTCCAGCCAGAGCCACCCACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTgt > 1:32252512/1‑66 ACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGCCGCAAAGTCGGTTT > 1:11655964/1‑68 ACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTT > 1:41059760/1‑68 ACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTT > 1:41511267/1‑68 ACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTT > 1:41557443/1‑68 ACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTT > 1:42108481/1‑68 ACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTT > 1:42323714/1‑68 ACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTT > 1:13572352/1‑68 ACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTT > 1:38748768/1‑68 ACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTT > 1:767596/1‑68 ACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTT > 1:5050631/1‑68 ACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTT > 1:5241775/1‑68 ACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTT > 1:12978258/1‑68 ACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTT > 1:37188551/1‑68 ACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTT > 1:14962119/1‑68 ACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTT > 1:15672868/1‑68 ACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTT > 1:10664848/1‑68 ACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTT > 1:22945083/1‑68 ACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTT > 1:18035005/1‑68 ACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTT > 1:18540314/1‑68 ACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTT > 1:28953327/1‑68 ACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTT < 1:35749861/67‑1 ACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTT < 1:17841118/67‑1 ACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGG > 1:26755651/1‑35 taTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTT < 1:9266038/66‑1 TCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTT > 1:30530849/1‑68 CTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTT < 1:3799221/68‑1 CTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTT < 1:28838234/68‑1 CTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTT < 1:31319609/68‑1 CTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTT < 1:8344067/68‑1 CTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTT > 1:7733381/1‑67 CTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTT > 1:7144947/1‑67 CTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTT > 1:24206902/1‑67 CTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTT > 1:9589958/1‑67 CTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTT > 1:12115042/1‑67 CTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTT > 1:4871211/1‑67 CTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTT > 1:13160573/1‑67 CTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTT > 1:43468221/1‑67 CTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTT > 1:13305350/1‑67 CTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTT > 1:37399279/1‑67 CTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTT > 1:37095558/1‑67 CTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTT > 1:35419580/1‑67 CTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTT > 1:19975196/1‑67 TCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTAC > 1:19947703/1‑68 TCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGCCGCAAAGTCGGTTTTTTTACCTCC > 1:3699969/1‑68 ||| TCCGCTTACTCATCCACTGCCTGTCA‑CGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3641181‑3641246‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCC > CP009273/3641449‑3641510 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |