| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3641246 | 659 (1.250) | 170 (0.340) +AGC |
12/106 | NT | 21.0% | intergenic (‑98/‑177) | dinQ/agrA | UV‑inducible membrane toxin, DinQ‑AgrB type I toxin‑antitoxin system/Inactive antisense sRNA |
| ? | CP009273 | 3641449 = | 696 (1.320) | noncoding (27/84 nt) | agrA | Inactive antisense sRNA | |||||
Only 100 of 939 total aligned reads displayed.
CGTCCTTGCAATAGTTTCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTC > CP009273/3641382‑3641516 | tCCTTGCAATAGTTTCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCag > 1:24216595/1‑68 (MQ=255) ttGCAATAGTTTCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGc < 1:29926581/68‑1 (MQ=255) aaTAGTTTCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGccacc > 1:35531540/1‑68 (MQ=255) aaTAGTTTCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGccacc > 1:21371218/1‑68 (MQ=255) aaTAGTTTCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGccacc > 1:17952291/1‑68 (MQ=255) aaTAGTTTCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGccacc > 1:42267055/1‑68 (MQ=255) aTAGTTTCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGccacca > 1:14686025/1‑68 (MQ=255) tAGTTTCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGccacca > 1:31321804/1‑67 (MQ=255) ccactgcctgtcacggcgcatgtctcattgttagataagaactctctcactccagcCAGAgccaccc > 1:18462602‑M2/57‑66 (MQ=255) aGTTTCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGccacca > 1:36704607/1‑66 (MQ=255) aGTTTCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGccacca > 1:26656622/1‑66 (MQ=255) aGTTTCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAAc < 1:18160450/68‑1 (MQ=255) aGTTTCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAAc < 1:28457388/68‑1 (MQ=255) aGTTTCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAAc < 1:19794680/68‑1 (MQ=255) aGTTTCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAAc < 1:1656319/68‑1 (MQ=255) ttCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCa > 1:19204564/1‑68 (MQ=255) cattATGGTATTAGCATTGATGCGTTAGATTATTTCTATCTCACTCCAGTCAGAGCCACCAACTCAgg < 1:2326617/65‑1 (MQ=25) cattATGGTATTAGCATTGATGCGTTAGATTATATCTATCTCACTCCAGCCAGAGCCACCAACTCAgg < 1:9559749/65‑1 (MQ=21) cAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAgg < 1:25742990/68‑1 (MQ=255) cAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAgg < 1:36391847/68‑1 (MQ=255) cAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGCCAGAGCCACCAACTCAgg < 1:43284787/68‑1 (MQ=255) ttATGGTAATAGCATTGATGCGTTAGATTATTGCTATCTCACTCCAGGCAGAGCCACCAACTCAGGGc < 1:20054271/67‑1 (MQ=21) aTGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTg > 1:40904753/1‑68 (MQ=255) aTTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAg > 1:17019266/1‑68 (MQ=255) aTTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAg > 1:1143923/1‑68 (MQ=255) aTTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAg > 1:14310745/1‑68 (MQ=255) ttAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGt < 1:38314996/68‑1 (MQ=255) gCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTAAGGGCTGGAAAGTaaa > 1:41914867/1‑68 (MQ=255) cATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCCCCAACTCAGGGCTGGAAAGTaaaa > 1:24980093/1‑68 (MQ=255) cATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTaaaa > 1:34335555/1‑68 (MQ=255) cATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTaaaa > 1:33319204/1‑68 (MQ=255) cATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTaaaa > 1:34701216/1‑68 (MQ=255) cATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTaaaa > 1:31688984/1‑68 (MQ=255) cATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTaaaa > 1:27000938/1‑68 (MQ=255) cATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTaaaa > 1:30950282/1‑68 (MQ=255) cATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTaaaa > 1:22606392/1‑68 (MQ=255) cATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTaaaa > 1:21714892/1‑68 (MQ=255) cATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTaaaa > 1:1050556/1‑68 (MQ=255) cATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTaaaa > 1:6162109/1‑68 (MQ=255) cATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTaaaa > 1:11742832/1‑68 (MQ=255) cATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTaaaa > 1:42927872/1‑68 (MQ=255) cATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTaaaa > 1:14008277/1‑68 (MQ=255) cATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTaaaa > 1:14987097/1‑68 (MQ=255) cATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTaaaa > 1:15565438/1‑68 (MQ=255) cATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTaaaa > 1:41505919/1‑68 (MQ=255) cATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTaaaa > 1:39704105/1‑68 (MQ=255) cATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTaaaa > 1:37877502/1‑68 (MQ=255) cATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTaaaa > 1:2079885/1‑68 (MQ=255) cATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTaaaa > 1:37384815/1‑68 (MQ=255) cATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTaaaa > 1:22227939/1‑68 (MQ=255) tGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCg > 1:17638142/1‑67 (MQ=255) tGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCg > 1:33951463/1‑67 (MQ=255) tGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCg > 1:4472384/1‑67 (MQ=255) tgttagataagaactctctcactccagcCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGAc > 1:35816761‑M2/29‑67 (MQ=255) aGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCaaa > 1:10182205/1‑68 (MQ=255) atgatgGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAg > 1:39327842/1‑67 (MQ=255) atgatgGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAg > 1:22000209/1‑67 (MQ=255) atgatgGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAg > 1:23912539/1‑67 (MQ=255) tgatgGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTc > 1:3046347/1‑68 (MQ=255) tgatgGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTc > 1:15975385/1‑68 (MQ=255) tgatgGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTc > 1:28972564/1‑68 (MQ=255) tgatgGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTc > 1:7717677/1‑68 (MQ=255) aagaactctctcactccagcCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCg > 1:10028721‑M2/21‑68 (MQ=255) aagaactctctcactccagcCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCg > 1:37251266‑M2/21‑68 (MQ=255) aagaactctctcactccagcCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCg > 1:554672‑M2/21‑68 (MQ=255) aagaactctctcactccagcCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCg > 1:28352652‑M2/21‑68 (MQ=255) aagaactctctcactccagcCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCg > 1:33052974‑M2/21‑68 (MQ=255) aagaactctctcactccagcCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCg > 1:79714‑M2/21‑68 (MQ=255) aagaactctctcactccagcCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCg > 1:8878237‑M2/21‑68 (MQ=255) ggCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGtt > 1:11134671/1‑68 (MQ=255) gCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGgtt > 1:21081396/1‑68 (MQ=255) actctctcactccagcCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGttt > 1:12234926‑M2/17‑68 (MQ=255) actctctcactccagcCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGttt > 1:43535796‑M2/17‑68 (MQ=255) actctctcactccagcCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGttt > 1:12978258‑M2/17‑68 (MQ=255) actctctcactccagcCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGttt > 1:4029465‑M2/17‑68 (MQ=255) actctctcactccagcCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGttt > 1:2959961‑M2/17‑68 (MQ=255) actctctcactccagcCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGttt < 1:32563350‑M2/52‑1 (MQ=255) actctctcactccagcCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGttt > 1:38748768‑M2/17‑68 (MQ=255) tatctcactccagcCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGttttt < 1:9266038‑M2/54‑1 (MQ=255) ctctcactccagcCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGtttttt < 1:28838234‑M2/55‑1 (MQ=255) ctcactccagcCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGttttttt > 1:13305350‑M2/12‑67 (MQ=255) ctcACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGttttttt > 1:5237244/1‑67 (MQ=35) tcactccagcCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTAc > 1:4941061‑M2/11‑68 (MQ=255) tcACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTAc < 1:7350578/68‑1 (MQ=35) tcACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTAc > 1:35031020/1‑68 (MQ=35) tcACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTAc > 1:12473622/1‑68 (MQ=35) cACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACa < 1:27391368/68‑1 (MQ=37) aCTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACa > 1:27782379/1‑67 (MQ=37) cTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATc < 1:4056873/68‑1 (MQ=40) tccagcCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGCCGCAAAGTCGGTTTTTTTACCTcc > 1:3699969‑M2/7‑68 (MQ=255) tCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACAt > 1:17391957/1‑66 (MQ=39) tCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATcc > 1:4258012/1‑68 (MQ=40) tCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATcc > 1:6885494/1‑68 (MQ=40) tCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATcc > 1:32118618/1‑68 (MQ=40) ccAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCg > 1:26166256/1‑68 (MQ=14) ccAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCg > 1:16156825/1‑68 (MQ=255) tCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGAt > 1:18785985/1‑67 (MQ=255) cAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGa < 1:8398925/65‑1 (MQ=40) cAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTc > 1:13713710/1‑68 (MQ=40) cAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTc > 1:19538347/1‑68 (MQ=40) | CGTCCTTGCAATAGTTTCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTC > CP009273/3641382‑3641516 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |