| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3641246 | 659 (1.250) | 170 (0.340) +AGC |
12/106 | NT | 21.0% | intergenic (‑98/‑177) | dinQ/agrA | UV‑inducible membrane toxin, DinQ‑AgrB type I toxin‑antitoxin system/Inactive antisense sRNA |
| ? | CP009273 | 3641449 = | 696 (1.320) | noncoding (27/84 nt) | agrA | Inactive antisense sRNA | |||||
Only 100 of 1001 total aligned reads displayed.
CATCCGCTTACTCATCCACTGCCTGTCA‑CGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGACCAGGACTTTGAAAGCGTTTATGCGCA > CP009273/3641179‑3641312 | cATCCGCTTACTCATCCACTGCCTGTCA‑CGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTcc > 1:32403579/1‑68 (MQ=255)cATCCGCTTACTCATCCACTGCCTGTCA‑CGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTcc > 1:12703361/1‑68 (MQ=255) aTCCGCTTACTCATCCACTGCCTGTCA‑CGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTcc < 1:10268172/67‑1 (MQ=255) aTCCGCTTACTCATCCACTGCCTGTCA‑CGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTcc < 1:25875790/67‑1 (MQ=255) cGCTTACTCATCCACTGCCTGTCA‑CGGCGCATGTCTCATTGTTAGATAAGATCTCTCTCACTCCGGcc > 1:3971375/1‑68 (MQ=255) cGCTTACTCATCCACTGCCTGTCA‑CGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGcc > 1:29094403/1‑68 (MQ=255) cGCTTACTCATCCACTGCCTGTCA‑CGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGcc > 1:13141153/1‑68 (MQ=255) gCTTACTCATCCACTGCCTGTCA‑CGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCa > 1:40878741/1‑68 (MQ=255) gCTTACTCATCCACTGCCTGTCA‑CGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCa > 1:37610205/1‑68 (MQ=255) gCTTACTCATCCACTGCCTGTCA‑CGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCa > 1:31496876/1‑68 (MQ=255) ttACTCATCCACTGCCTGTCA‑CGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCaga < 1:4947430/68‑1 (MQ=255) ttACTCATCCACTGCCTGTCA‑CGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCaga < 1:19888895/68‑1 (MQ=255) ttACTCATCCACTGCCTGTCA‑CGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCaga < 1:19049642/68‑1 (MQ=255) aCTCATCCACTGCCTGTCA‑CGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGc < 1:21785879/68‑1 (MQ=255) aCTCATCCACTGCCTGTCA‑CGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGc < 1:16603835/68‑1 (MQ=255) cTCATCCACTGCCTGTCA‑CGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCa < 1:22035134/68‑1 (MQ=255) cTCATCCACTGCCTGTCA‑CGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCa < 1:36396939/68‑1 (MQ=255) tCATCCACTGCCTGTCA‑CGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCa > 1:19473435/1‑67 (MQ=255) cATCCACTGCCTGTCACCGTCGAATTTCTCATTGTTAGATAAGAACTCTCTCACTCCagccagagcca < 1:18365320‑M1/68‑12 (MQ=255) aTCCACTGCCTGTCA‑CGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCa < 1:26213284/68‑1 (MQ=255) ccACTGCCTGTCA‑CGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGt < 1:38566963/68‑1 (MQ=255) ccACTGCCTGTCA‑CGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGt > 1:11217084/1‑68 (MQ=255) ccACTGCCTGTCA‑CGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGt > 1:836374/1‑68 (MQ=255) ccACTGCCTGTCA‑CGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGt < 1:22514463/68‑1 (MQ=255) ccACTGCCTGTCA‑CGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGt < 1:41838908/68‑1 (MQ=255) cACTGCCTGTCA‑CGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGtt > 1:33217880/1‑68 (MQ=255) aCTGCCTGTCA‑CGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTa < 1:16243944/68‑1 (MQ=255) aCTGCCTGTCA‑CGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTa > 1:24966070/1‑68 (MQ=255) aCTGCCTGTCA‑CGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTa > 1:31992393/1‑68 (MQ=255) aCTGCCTGTCA‑CGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTa > 1:40047593/1‑68 (MQ=255) cTGCCTGTCA‑CGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTaa < 1:30985963/68‑1 (MQ=255) cTGTCA‑CGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTAACGGc < 1:1803082/68‑1 (MQ=255) cA‑CGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTAACGGcacca < 1:36726051/68‑1 (MQ=255) cA‑CGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTAACGGcacca < 1:14938040/68‑1 (MQ=255) a‑CGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCagccagagccaccaactcaggg > 1:403487‑M1/1‑41 (MQ=255) a‑CGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTAACGGcacca > 1:17066700/1‑67 (MQ=255) a‑CGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTAACGGcacca > 1:39311993/1‑67 (MQ=255) a‑CGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTAACGGcacca > 1:28309308/1‑67 (MQ=255) ggCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTAACGGCACCAccc < 1:7630640/68‑1 (MQ=255) ggCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTAACGGCACCAccc < 1:35920858/68‑1 (MQ=255) ggCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTAACGGCACCAccc < 1:24372549/68‑1 (MQ=255) ggCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTAACGGCACCAccc < 1:15464631/68‑1 (MQ=255) ggCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTAACGGCACCAccc < 1:6639560/68‑1 (MQ=255) ggCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTAACGGCACCAccc < 1:28789290/68‑1 (MQ=255) cgcATGTCTCATTGTTAGATAAGAACTCTCTCACTCCggccagagccacagtcacagggctggaaagt > 1:3396339‑M1/1‑37 (MQ=255) cgcATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTAACGGCACCACCCGt > 1:35576556/1‑68 (MQ=255) cgcATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTAACGGCACCACCCGt > 1:5732192/1‑68 (MQ=255) cgcATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTAACGGCACCACCCGt > 1:8760096/1‑68 (MQ=255) cgcATGTCTCATAGTTAGATAAGAAATCTCTCACTCCGCCAAGAGCATCAGTTAAAGCCACAAcccct > 1:32769892/1‑66 (MQ=255) gcATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTAACGGCACCACCCGt < 1:36055874/67‑1 (MQ=255) aTGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACt < 1:42743000/68‑1 (MQ=255) aTGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACt < 1:2402112/68‑1 (MQ=255) gTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTc < 1:27465642/68‑1 (MQ=255) tctcATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACt > 1:12414117/1‑65 (MQ=255) tGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGCCCAg > 1:6009131/1‑68 (MQ=255) tGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGACCAg > 1:25329692/1‑68 (MQ=255) tGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGACCAg > 1:18794762/1‑68 (MQ=255) gTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGACCAgg < 1:15784311/68‑1 (MQ=255) gTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGACCAgg < 1:29829213/68‑1 (MQ=255) tAGATAAGAACTCTCTCACTCCagccagagccaccaactcagggctggaaagtaaaaaaccgacgcaa > 1:42296597‑M1/1‑22 (MQ=255) tAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGACCAGGa < 1:10932102/67‑1 (MQ=255) aGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGACCAGGACt < 1:3361714/68‑1 (MQ=255) aGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGACCAGGACt < 1:2789902/68‑1 (MQ=255) aTAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGACCAGGACttt > 1:15223840/1‑68 (MQ=255) tAAGAACTCTCTCACTCCagccagagccaccaactcagggctggaaagtaaaaaaccgacgcaaagtc < 1:29490687‑M1/68‑51 (MQ=255) aaGAACTCTCTCACTCCagccagagccaccaactcagggctggaaagtaaaaaaccgacgcaaagtcg > 1:4697282‑M1/1‑17 (MQ=255) aaGAACTCTCTCACTCCagccagagccaccaactcagggctggaaagtaaaaaaccgacgcaaagtcg > 1:34786790‑M1/1‑17 (MQ=255) aaGAACTCTCTCACTCCagccagagccaccaactcagggctggaaagtaaaaaaccgacgcaaagtcg > 1:21316302‑M1/1‑17 (MQ=255) aaGAACTCTCTCACTCCagccagagccaccaactcagggctggaaagtaaaaaaccgacgcaaagtcg > 1:9241502‑M1/1‑17 (MQ=255) aaGAACTCTCTCACTCCagccagagccaccaactcagggctggaaagtaaaaaaccgacgcaaagtcg > 1:37267224‑M1/1‑17 (MQ=255) aaGAACTCTCTCACTCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGCCCAGGACTTTGa > 1:20926882/1‑68 (MQ=255) aCTCTCTCACTCCagccagagccaccaactcagggctggaaagtaaaaaaccgccgcaaagtcggttt > 1:11655964‑M1/1‑13 (MQ=255) aCTCTCTCACTCCagccagagccaccaactcagggctggaaagtaaaaaaccgacgcaaagtcggttt > 1:22945083‑M1/1‑13 (MQ=255) aCTCTCTCACTCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGACCAGGACTTTGAAAGc < 1:20194529/68‑1 (MQ=255) aCTCTCTCACTCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGACCAGGACTTTGAAAGc < 1:43119708/68‑1 (MQ=255) aCTCTCTCACTCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGACCAGGACTTTGAAAGc > 1:7930132/1‑68 (MQ=255) ctctctCACTCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGACCAGGACTTTGAAAGCg < 1:24642067/68‑1 (MQ=255) ctctctCACTCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGACCAGGACTTTGAAAGCg < 1:10002661/68‑1 (MQ=255) tctctcACTCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGACCAGGACTTTGAAAGCGt > 1:43551113/1‑68 (MQ=255) ctcACTCCagccagagccaccaactcagggctggaaagtaaaaaaccgacgcaaagtcggttttttt > 1:1346705‑M1/1‑8 (MQ=255) ctcACTCCagccagagccaccaactcagggctggaaagtaaaaaaccgacgcaaagtcggtgttttt > 1:17496129‑M1/1‑8 (MQ=255) ctcACTCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGACCAGGACTTTGAAAGCGTTTa > 1:27033647/1‑68 (MQ=255) ctcACGCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGACCAGGACTGTGAAAGCGTTTa > 1:20475670/1‑68 (MQ=255) aCTCCGGCCAGAGCATCAGTTAACGGCACCCCCCGTACTTCTGACCAGGACTTTGAAAGCGTTTATgc > 1:14303719/1‑68 (MQ=255) aCTCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGACCAGGACTTTGAAAGCGTTTATgc > 1:2346589/1‑68 (MQ=255) cTCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGACCAGGACTTTGAAAGCGTTTATgcg < 1:13979010/68‑1 (MQ=255) cTCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGACCAGGACTTTGAAAGCGTTTATgcg < 1:41453605/68‑1 (MQ=255) tCCagccagagccaccaactcagggctggaaagtaaaaaaccgccgcaaagtcggtttttttacctcc > 1:3699969‑M1/1‑3 (MQ=255) tCCGGCCAGAGCATCAGTTTACGGCCCCACCCGTACTTCTGACCAGGAATTTGAAAGCGTTTATgcgc > 1:9524220/1‑68 (MQ=255) tCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGACCAGGACTTTGAAAGCGTTTATgcgc > 1:7066208/1‑68 (MQ=255) tCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGACCAGGACTTTGAAAGCGTTTATgcgc > 1:30468616/1‑68 (MQ=255) tCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGACCAGGACTTTGAAAGCGTTTATgcgc > 1:41179682/1‑68 (MQ=255) tCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGACCAGGACTTTGAAAGCGTTTATgcgc > 1:38011187/1‑68 (MQ=255) tCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGACCAGGACTTTGAAAGCGTTTATgcgc > 1:35311611/1‑68 (MQ=255) tCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGACCAGGACTTTGAAAGCGTTTATgcgc > 1:34338923/1‑68 (MQ=255) tCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGACCAGGACTTTGAAAGCGTTTATgcgc > 1:26773058/1‑68 (MQ=255) tCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGACCAGGACTTTGAAAGCGTTTATgcgc > 1:23845986/1‑68 (MQ=255) tCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGACCAGGACTTTGAAAGCGTTTATgcgc < 1:14759339/68‑1 (MQ=255) tCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGACCAGGACTTTGAAAGCGTTTATgcgc > 1:12019273/1‑68 (MQ=255) tCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGACCAGGACTTTGAAAGCGTTTATgccg > 1:5417997/1‑66 (MQ=255) | CATCCGCTTACTCATCCACTGCCTGTCA‑CGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGACCAGGACTTTGAAAGCGTTTATGCGCA > CP009273/3641179‑3641312 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |