New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 1161581276 (0.520)15 (0.030)
+G		 9/110 NT 6.1% coding (41/1305 nt) ndh respiratory NADH dehydrogenase 2/cupric reductase
?CP009273 1162078 = 198 (0.380)coding (538/1305 nt) ndh respiratory NADH dehydrogenase 2/cupric reductase

GGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1161531‑1161581
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCA  >  CP009273/1162078‑1162130
                                                   |                                                     
GGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGGCTGGTGTTGA                                         >  1:7867706/1‑66
GGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGACGGGTGTAGAAa                                       >  1:2356609/1‑67
GGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGACGGGTGTAGAAC                                       >  1:22997954/1‑68
 GGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCTACTGGTGTAGAAa                                       >  1:31177522/1‑66
      CACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGCCGGGTGTAGAACTCTCC                                  >  1:20969871/1‑67
             ACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGCCGGGTGTAGAACTCTCCGCTG                              >  1:24540225/1‑64
             ACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGACGGGTGTAGAACTCTCCGCTGAATT                          >  1:32576823/1‑68
                   CCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCTGCTGGTCTAGAAATCTCCGCTGAAGTGCACAA                    >  1:21337475/1‑68
                   CCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCTGCGGGTGTAGAA                                        >  1:38112800/1‑48
                   CCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGACGGGTGTAGAAATCTCCGCTGAATTGCACA                     >  1:11903481/1‑67
                             AGATTGTGATTGTCGGCGGCGGGGCGCGGGGTGTAGAACTCTCCGCTGATTTGCACAACGCGGTCAA           >  1:29279299/1‑67
                               ATTGTGATTGTCGGCGGCGGGGCGCGGGGTGTAGAAATCTCCGCTGAATTGCACAACGCGGTCACGCc        >  1:34062977/1‑67
                               ATTGTGATTGTCGGCGGCGGGGCGACGGGTGTAGAACTCTCAGCTGAATTGCACAAAGCGGTCGAGCA        >  1:18937602/1‑68
                                    GATTGTCGGCGGCGGGGCGACGGGTGTAGAACTCTCCGCAGAATTGCACAACGCGGTCATGCAACTGC   >  1:24312086/1‑68
                                     ATTGTCGGCGGCGGGGCGACGGGTGTAGAAATCTCCGCTGAATTGCACAACGCGGTCAAGCTACTGCA  >  1:7431547/1‑68
                                                   |                                                     
GGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1161531‑1161581
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCA  >  CP009273/1162078‑1162130

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.