New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 1161581276 (0.520)15 (0.030)
+G		 9/110 NT 6.1% coding (41/1305 nt) ndh respiratory NADH dehydrogenase 2/cupric reductase
?CP009273 1162078 = 198 (0.380)coding (538/1305 nt) ndh respiratory NADH dehydrogenase 2/cupric reductase

Only 100 of 357 total aligned reads displayed.

TTCCTGAAATACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTAC  >  CP009273/1162012‑1162143
                                                                  |                                                                 
ttCCTGAAATACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGgcgc                                                                  >  1:21135012/1‑68 (MQ=255)
ttCCTGAAATACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGgcgc                                                                  >  1:23887002/1‑68 (MQ=255)
ttCCTGAAATACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGgcgc                                                                  >  1:40682388/1‑68 (MQ=255)
  ccTGAAATACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGcgcg                                                                 >  1:19600354/1‑67 (MQ=255)
     gAAATACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACgg                                                             <  1:39529549/68‑1 (MQ=255)
      aaaTACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACggg                                                            >  1:9545363/1‑68 (MQ=255)
       aaTACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgt                                                           <  1:41147870/68‑1 (MQ=255)
       aaTACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgt                                                           <  1:31068825/68‑1 (MQ=255)
       aaTACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgt                                                           <  1:31998704/68‑1 (MQ=255)
       aaTACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgt                                                           <  1:34303823/68‑1 (MQ=255)
       aaTACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgt                                                           <  1:42405536/68‑1 (MQ=255)
       aaTACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgt                                                           <  1:1380381/68‑1 (MQ=255)
       aaTACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgt                                                           <  1:7814097/68‑1 (MQ=255)
       aaTACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgt                                                           <  1:6517932/68‑1 (MQ=255)
         tACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgtgt                                                         >  1:21542977/1‑68 (MQ=255)
         tACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgtgt                                                         >  1:9376511/1‑68 (MQ=255)
         tACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgtgt                                                         >  1:22091971/1‑68 (MQ=255)
         tACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgtgt                                                         >  1:1074029/1‑68 (MQ=255)
         tACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgtgt                                                         >  1:25089556/1‑68 (MQ=255)
         tACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgtgt                                                         >  1:5294811/1‑68 (MQ=255)
         tACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgtgt                                                         <  1:39586553/68‑1 (MQ=255)
         tACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgtgt                                                         >  1:13745154/1‑68 (MQ=255)
          aCTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTa                                                        >  1:33248491/1‑68 (MQ=255)
          aCTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTa                                                        >  1:7554657/1‑68 (MQ=255)
          aCTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTa                                                        >  1:14178700/1‑68 (MQ=255)
            tCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGa                                                      >  1:4521269/1‑68 (MQ=255)
            tCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGa                                                      >  1:31315908/1‑68 (MQ=255)
            tCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGa                                                      <  1:42117198/68‑1 (MQ=255)
            tCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGa                                                      >  1:10337069/1‑68 (MQ=255)
              gggggtcacgttgactacgccattgaaaaagattgtgattgtcggcggcgggGCGGCTGGTGTTGa                                                      >  1:7867706‑M2/53‑66 (MQ=255)
              gggggtcacgttgactacgccattgaaaaagattgtgattgtcggcggcgggGCGACGGGTGTAGAAc                                                    >  1:22997954‑M2/53‑68 (MQ=255)
               ggggtcacgttgactacgccattgaaaaagattgtgattgtcggcggcggTGCGACGGGTGTAgaaa                                                    >  1:26208388‑M2/51‑66 (MQ=255)
               gCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAAc                                                    >  1:41707510/1‑67 (MQ=255)
               gCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAAc                                                    >  1:11997105/1‑67 (MQ=255)
               gCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAAc                                                    >  1:34069382/1‑67 (MQ=255)
                   tcacgttgactacgccattgaaaaagattgtgattgtcggcggcggaGCGTCGGGTGTAGAACtctc                                                >  1:23329924‑M2/48‑67 (MQ=255)
                   tcacgtggactactccattcaaaaacattgcgattgtcggcggcggCGCGACGGGTGTAGAACTCTcc                                               <  1:30471225‑M2/22‑1 (MQ=255)
                   aCCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTcc                                               <  1:7410549/68‑1 (MQ=255)
                    cacgttgactacgccatagaaaaagattgggattgtcggcggcggCGCGACGGGTGTAGAACTCTcc                                               <  1:35287933‑M2/22‑1 (MQ=255)
                      tGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTcc                                               >  1:28870762/1‑65 (MQ=255)
                      tGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCCGCGGCGCGACGCGTGTAGAACACTCCgat                                            >  1:18928765/1‑66 (MQ=255)
                         tgactacgccattgaaaaagattgtgattgtcggcggcggCGCGACGGGTGTAGAACTCTCCCCTGaa                                         >  1:42938633‑M2/41‑68 (MQ=255)
                         tgactacgccatacaataagattgtgattgtcggcggcggCGCGACGGGTGTAGAACTCTCCGCTGa                                          <  1:11493099‑M2/27‑1 (MQ=255)
                         gcgcGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGaa                                         >  1:41494440/1‑68 (MQ=255)
                         gcgcGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGa                                          <  1:28544862/67‑1 (MQ=255)
                         gcgcGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGa                                          <  1:20118362/67‑1 (MQ=255)
                         gcgcGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGa                                          <  1:12925724/67‑1 (MQ=255)
                         gcgcGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGa                                          <  1:5463886/67‑1 (MQ=255)
                          cgcgAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGTGTGTAGAACTCTCCGCTGAAt                                        >  1:34897088/1‑68 (MQ=255)
                          cgcgAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAAt                                        >  1:33041187/1‑68 (MQ=255)
                          cgcgAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAAt                                        >  1:12526770/1‑68 (MQ=255)
                           gcgAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAAtt                                       >  1:4890668/1‑68 (MQ=255)
                           gcgAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAAt                                        <  1:40343248/67‑1 (MQ=255)
                           actacgccattgaaaaagattgtgattgtcggcggcgggGCGCCGGGTGTAGAACTCTCCGCTg                                           >  1:24540225‑M2/40‑64 (MQ=255)
                              acgccattgaaaaagattgtgattgtcggcggcggaGCTACGGGTGTAGaa                                                     >  1:15096406‑M2/37‑51 (MQ=255)
                                        tGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTc                          >  1:43475602/1‑68 (MQ=255)
                                        agAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTc                          <  1:38060384/67‑1 (MQ=255)
                                         gAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTc                          <  1:301075/67‑1 (MQ=255)
                                          aagattgtgattgtcggcggcggCGCGCCGGGTGTAGAAATCTCCGCTCAAATGCACAACGCGGtcc                         >  1:27473223‑M2/24‑66 (MQ=255)
                                           aCATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCaa                        >  1:29111550/1‑67 (MQ=255)
                                           aCATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCaa                        >  1:8596419/1‑67 (MQ=255)
                                           aCATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCaa                        <  1:20937269/67‑1 (MQ=255)
                                           aCATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAg                       <  1:10016663/68‑1 (MQ=255)
                                           aCATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAg                       <  1:30277304/68‑1 (MQ=255)
                                           aCATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCAGCTGAATTGCACAACGCGGTCat                        >  1:37007726/1‑66 (MQ=255)
                                             aTTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa                     <  1:13438253/68‑1 (MQ=255)
                                             aTTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa                     <  1:9163344/68‑1 (MQ=255)
                                             aTTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa                     <  1:15995463/68‑1 (MQ=255)
                                             aTTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa                     >  1:22269701/1‑68 (MQ=255)
                                             aTTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa                     >  1:39242640/1‑68 (MQ=255)
                                             aTTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa                     >  1:3854560/1‑68 (MQ=255)
                                              ttgtgattgtcggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa                     <  1:17492337‑M2/48‑1 (MQ=255)
                                                  gattgtcggcggcgggGCGACGGGTGTAGAACTCTCCGCAGAATTGCACAACGCGGTCATGCAACTGc                >  1:24312086‑M2/17‑68 (MQ=255)
                                                  gattgtcggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGc                <  1:37393871‑M2/53‑1 (MQ=255)
                                                  gattgtcggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGc                <  1:42742074‑M2/53‑1 (MQ=255)
                                                  gattgtcggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGc                <  1:15372567‑M2/53‑1 (MQ=255)
                                                     tgtcggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGcaca             >  1:2557045‑M2/13‑68 (MQ=255)
                                                     tgtcggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGcaca             >  1:8774357‑M2/13‑68 (MQ=255)
                                                        cggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGc           <  1:40123106‑M2/58‑1 (MQ=255)
                                                        cggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGc           <  1:29584964‑M2/58‑1 (MQ=255)
                                                        cggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGc           <  1:6758821‑M2/58‑1 (MQ=255)
                                                        cggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGc           <  1:31806446‑M2/58‑1 (MQ=255)
                                                        cggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGc           <  1:18716584‑M2/58‑1 (MQ=255)
                                                        cggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCt          >  1:26577442‑M2/10‑68 (MQ=255)
                                                          gcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTAc        >  1:17725700‑M2/8‑68 (MQ=255)
                                                          gcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTAc        >  1:10429084‑M2/8‑68 (MQ=255)
                                                            gtcggcgCGACTGTTGTAGAACTCTCCTCTGAATTGCACAAAGCTGTCTAGCAACTGCACAGCTACg       <  1:43150269/65‑1 (MQ=255)
                                                            ggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAATGCGGTCAAGCAACTGCACAGCTACgg      <  1:16820579‑M2/63‑1 (MQ=255)
                                                            ggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCCCAGCTACgg      >  1:27278124‑M2/6‑68 (MQ=255)
                                                            ggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACg       <  1:32071583‑M2/62‑1 (MQ=255)
                                                            ggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACg       <  1:15708911‑M2/62‑1 (MQ=255)
                                                            ggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACg       <  1:19207121‑M2/62‑1 (MQ=255)
                                                             gcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGt     >  1:16951794‑M2/5‑68 (MQ=255)
                                                              cggCGCGACGGGTGTAGAACTCTCCGCTTAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGt     <  1:33873022‑M2/64‑1 (MQ=255)
                                                              cggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGt     <  1:31578603‑M2/64‑1 (MQ=255)
                                                              cggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGt     <  1:36402053‑M2/64‑1 (MQ=255)
                                                               ggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGtt    <  1:37932735‑M2/65‑1 (MQ=255)
                                                               ggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGtt    <  1:39787955‑M2/65‑1 (MQ=255)
                                                                 cgcgACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTAc  <  1:6012170/67‑1 (MQ=255)
                                                                 cgcgACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTAc  <  1:30884563/67‑1 (MQ=255)
                                                                  |                                                                 
TTCCTGAAATACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTAC  >  CP009273/1162012‑1162143

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.