| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1161581 | 276 (0.520) | 15 (0.030) +G |
9/110 | NT | 6.1% | coding (41/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase |
| ? | CP009273 | 1162078 = | 198 (0.380) | coding (538/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase | |||||
Only 100 of 449 total aligned reads displayed.
TTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGAAAAAAGCCAAAA > CP009273/1161514‑1161646 | ttGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGG < 1:601563‑M1/68‑1 (MQ=255) ggTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGt > 1:8039397/1‑67 (MQ=255) aaaTTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCtggtgg > 1:1727970/1‑68 (MQ=255) aaaTTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCtggtgg > 1:35192312/1‑68 (MQ=255) aaTTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCtggtgg > 1:12749082/1‑67 (MQ=255) tttAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGc < 1:38720341/67‑1 (MQ=255) aGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGaa > 1:23807321/1‑68 (MQ=255) gggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCTGCGGCGGTGCTGGTGGGCTGGaaa > 1:34570315/1‑68 (MQ=255) gggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGcgcgacgggtgtaga > 1:18764097‑M1/1‑51 (MQ=255) gggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGaaa > 1:33171037/1‑68 (MQ=255) gggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGaaa > 1:4906241/1‑68 (MQ=255) gggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGaaa > 1:19238045/1‑68 (MQ=255) gggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGaaa > 1:41960043/1‑68 (MQ=255) gggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGaaa > 1:18326731/1‑68 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAAt > 1:2188268/1‑68 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAAt > 1:41523406/1‑68 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAAt > 1:27240579/1‑68 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAAt > 1:15357668/1‑68 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAAt > 1:15633271/1‑68 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAAt > 1:19806577/1‑68 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAAt > 1:16991119/1‑68 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAAt > 1:31864243/1‑68 (MQ=255) gggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATg > 1:12425375/1‑68 (MQ=255) cACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCa > 1:24819823/1‑67 (MQ=255) gTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGcgctacgggtgttgaactctcagctc > 1:26535582‑M1/1‑42 (MQ=255) gTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAacac > 1:10641677/1‑68 (MQ=255) gTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAacac > 1:39238717/1‑68 (MQ=255) gTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAacac > 1:8737447/1‑68 (MQ=255) gTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAacac > 1:30977358/1‑68 (MQ=255) tgcctaaGCCATAGAAAAAGATTGTGATTGTCGGCGGCGGcgcgacgggtgtagaactctccgctga < 1:30179757‑M1/64‑28 (MQ=255) tGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAAcaca > 1:20999027/1‑67 (MQ=255) tGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAAcaca < 1:10770173/67‑1 (MQ=255) tGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAAcaca > 1:24354633/1‑67 (MQ=255) tGACTACGCCATACAATAAGATTGTGATTGTCGGCGGCGGcgcgacgggtgtagaactctccgctga < 1:11493099‑M1/67‑28 (MQ=255) gACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGc < 1:3539582/68‑1 (MQ=255) aCTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGggcgacgggtgtagaactctccgctgaatt > 1:32576823‑M1/1‑38 (MQ=255) aCTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAAcaca > 1:33939530/1‑65 (MQ=255) aCTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAAcaca > 1:40029259/1‑65 (MQ=255) aCTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAAcaca > 1:34231000/1‑65 (MQ=255) aCTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAAcaca > 1:17936856/1‑65 (MQ=255) aCTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAAcaca > 1:26882426/1‑65 (MQ=255) aCTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAAcaca > 1:14385615/1‑65 (MQ=255) cTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTg > 1:11841643/1‑68 (MQ=255) cTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTg > 1:30679490/1‑68 (MQ=255) cTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTg > 1:14670092/1‑68 (MQ=255) cTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCCGGAAATGGCAACACAGCTg > 1:31215602/1‑68 (MQ=255) tACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTgg > 1:40363011/1‑68 (MQ=255) cGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTgggg < 1:10407054/68‑1 (MQ=255) gCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGc > 1:39594742/1‑68 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGagcgacgggtgtagaactctccgctgaattgcaca > 1:40939151‑M1/1‑32 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGagcgacgggtgtagaactctccgcacaattgcaca > 1:15971075‑M1/1‑32 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:32817169/1‑68 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:35818677/1‑68 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:17565700/1‑68 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:19466444/1‑68 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:39358227/1‑68 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:11238458/1‑68 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:23393803/1‑68 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:10092440/1‑68 (MQ=255) cATTGAAAAAGATTGTGATTGTCGGCGGCGGcgcgacgggtgtagaactctcagctgaattgcgcaa > 1:13363691‑M1/1‑31 (MQ=255) aTTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATa > 1:20513518/1‑68 (MQ=255) aaaaGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTg > 1:5814097/1‑68 (MQ=255) aaGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTggg > 1:26005353/1‑68 (MQ=255) aaGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTggg > 1:28766313/1‑68 (MQ=255) aaGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTggg > 1:9242834/1‑68 (MQ=255) aaGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTggg > 1:29597719/1‑68 (MQ=255) aGATTGTGATTGTCGGCGGCGGggcgcggggtgtagaactctccgctgatttgcacaacgcggtcaa > 1:29279299‑M1/1‑22 (MQ=255) aGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTggg > 1:22473083/1‑67 (MQ=255) attgtgattgtCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGAc > 1:21357334/1‑67 (MQ=255) attgtgattgtCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGAc > 1:38033746/1‑67 (MQ=255) tgtgattgtCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCa > 1:5102235/1‑68 (MQ=255) tgtgattgtCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCa < 1:23128289/68‑1 (MQ=255) tgtgattgtCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCa < 1:27540443/68‑1 (MQ=255) tgtgattgtCGGCGGCGGTGCTGGTGGGCTCGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCa > 1:28011386/1‑68 (MQ=255) gattgtCGGCGGCGGcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgc < 1:37393871‑M1/68‑54 (MQ=255) gattgtCGGCGGCGGcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgc < 1:31591313‑M1/68‑54 (MQ=255) attgtCGGCGGCGGggcgacgggtgtagaaatctccgctgaattgcacaacgcggtcaagctactgca > 1:7431547‑M1/1‑14 (MQ=255) attgtCGGCGGCGGcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgc < 1:33371035‑M1/67‑54 (MQ=255) attgtCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGaa > 1:11589887/1‑68 (MQ=255) attgtCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGaa > 1:18445700/1‑68 (MQ=255) tgtCGGCGGCGGcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcaca > 1:25489706‑M1/1‑12 (MQ=255) tgtCGGCGGCGGcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcaca > 1:43518818‑M1/1‑12 (MQ=255) gtCGGCGGCGGcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacag < 1:42762321‑M1/68‑58 (MQ=255) tCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGaaaaaa > 1:6210128/1‑68 (MQ=255) cggcggcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagc < 1:40801552‑M1/67‑59 (MQ=255) cggcggcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagc < 1:37198720‑M1/67‑59 (MQ=255) ggcggcggTGCTGGTGGGCTGGAAATGGCAACACAGCTCGGGCATAAGCTGGGACGCAAGAAAAAAg > 1:33749280/1‑67 (MQ=255) gcggcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagccactgcacagctac > 1:2831029‑M1/1‑7 (MQ=255) gcggcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagctac > 1:30425773‑M1/1‑7 (MQ=255) gcggcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagctac > 1:6872893‑M1/1‑7 (MQ=255) ggcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagctacg < 1:43325576‑M1/67‑63 (MQ=255) ggcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagctacg < 1:42503362‑M1/67‑63 (MQ=255) ggcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagctacg < 1:16885172‑M1/67‑63 (MQ=255) ggcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagctacg < 1:15054421‑M1/67‑63 (MQ=255) ggcggAGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGAAAAAAGCCaa > 1:3648976/1‑68 (MQ=255) gcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagctacggt > 1:7816754‑M1/1‑4 (MQ=255) cggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagctacggt < 1:37840114‑M1/67‑65 (MQ=255) cggTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGAAAAAAGCCaaa < 1:38368910/67‑1 (MQ=255) cggTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGAAAAAAGCCaaa < 1:9494446/67‑1 (MQ=255) ggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagctacggtt < 1:39787955‑M1/67‑66 (MQ=255) | TTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGAAAAAAGCCAAAA > CP009273/1161514‑1161646 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |