| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1238033 = | 628 (1.190) | 38 (0.110) | 17/76 | NT | 9.7% | coding (504/915 nt) | ldcA | murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A |
| ? | CP009273 | 1238051 = | 280 (0.780) | coding (486/915 nt) | ldcA | murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A | |||||
Only 100 of 207 total aligned reads displayed.
CTTTACCGAGCACCATTTCTGGCTGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGGCCCGACATGTCGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1238117‑1238033‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcccgacatgtcgggccTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAG > CP009273/1238051‑1238117 CTTTACCGAGCACCATTTCTGGCTGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAG < 1:17899574/68‑1 TTTACCGAGCACCATTTCTGGCTGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGG < 1:7132366/68‑1 TTTACCGAGCACCATTTCTGGCTGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGG < 1:40359995/68‑1 TTTACCGAGCACCATTTCTGGCTGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGG < 1:14716328/68‑1 TTTACCGAGCACCATTTCTGGCTGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGG < 1:16799008/68‑1 TTACCGAGCACCATTTCTGGCTGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGGC < 1:35396359/68‑1 TTACCGAGCACCATTTCTGGCTGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGGC < 1:26162913/68‑1 TTACCGAGCACCATTTCTGGCGGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGGC < 1:33080435/68‑1 TACCGAGCACCATTTCTGGCTGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGGCC < 1:25091963/68‑1 ACCGAGCACCATTTCTGGCTGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGGCCC > 1:8966071/1‑68 ACCGAGCACCATTTCTGGCTGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGGCCC < 1:41292227/68‑1 ACCGAGCACCATTTCTGGCTGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGGCCC > 1:37183735/1‑68 ACCGAGCACCATTTCTGGCTGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGGCCC > 1:36295933/1‑68 ACCGAGCACCATTTCTGGCTGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGGCCC > 1:24431642/1‑68 CCGAGCACCATTTCTGGCTGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGGCCCG < 1:31744796/68‑1 CGAGCACCATTTCTGGCTGGCGTTTCGCAATGAACCCTTCACCATTGAATGGCAAGGGGAAGGCCCG > 1:39655335/1‑67 CGAGCACCATTTCTGGCTGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGGCCCGA < 1:2692233/68‑1 CGAGCACCATTTCTGGCTGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGGCCCG > 1:16563287/1‑67 CGAGCACCATTTCTGGCTGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGGCCCG > 1:35297089/1‑67 CGAGCACCATTTCTGGCTGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGGCCCG > 1:10405480/1‑67 CGAGCACCATTTCTGGCTGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGGCCCG > 1:27004787/1‑67 CGAGCACCATTTCTGGCTGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGGCCCG > 1:21175610/1‑67 CGAGCACCATTTCTGGCTGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGGCCCG > 1:22042364/1‑67 CGAGCACCATTTCTGGCTGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGGCCCG > 1:30487880/1‑67 CGAGCACCATTTCTGGCTGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGGCCCG > 1:29672445/1‑67 CGAGCACCATTTATGGCTGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGGCCCG > 1:10803509/1‑67 GCACCATTTCTGGCTGGCGTTACGCAATGAACCCTTCACCATTGAATGGCAAGGGGAAGGCCCGACAT > 1:34212598/1‑68 ACCATTTCTGGCTGGCGTTACGCAATGAACCCTTCACCATTGAATGGCAAGGGGAAGGCCCGACAT < 1:28673864/66‑1 ACCATTTCTGGCTGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGGCCCGACAT < 1:34287361/66‑1 ACCATTTCTGGCTGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGGCCCGACAT < 1:28986368/66‑1 ACCATTTCTGGCTGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGGCCCGACAT < 1:7357146/66‑1 ACCATTTCTGGCTGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGGCCCGACAT < 1:6470027/66‑1 ACCATTTCTGGCTGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGGCCCGACAT < 1:2042748/66‑1 ATTTCTGGCTGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGGCCCGACATGTCGG > 1:38617309/1‑68 TTTCTGGCTGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGGCCCGACATGTCGGG < 1:19178149/68‑1 TTTCTGGCTGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGGCCCGACATGTCGGG < 1:2934460/68‑1 TTTCTGGCTGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGGCCCGACATGTCGG > 1:20087089/1‑67 TTCTGGCTGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGGCCCGACATGTCGGGC < 1:4398624/68‑1 TTCTGGCTGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGGCCCGACATGTCGGGC < 1:8305839/68‑1 TTCTGGCTGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGGCCCGACATGTCGGG > 1:41079119/1‑67 cgGGCGTTACGCAATGAACCCTTCACCATTGAATGGCAAGGGGAAGGCCCGACATGTCGGGCCTTCC < 1:3829536/65‑1 CTGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGGCCCGACATGTCGGGCCTTCC < 1:41449241/67‑1 TGGCGTTACGCAATTAAACCTTCACCATTGAATGGCTAGGGGAAGTCCCGACATGTCGGGCCTTCCC < 1:23056127/67‑1 TGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGGCCCGACATGTCGGGCCTTCCC < 1:8054516/67‑1 CGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGGCCCGACATGTCGGGCCTTCCCCTT < 1:27059385/67‑1 ACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGGCCCGACATGTCGGGCCTTCCCCTTGCCAT < 1:36979437/68‑1 ACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGGCCCGACATGTCGGGCCTTCCCCTTGCCAT < 1:29193323/68‑1 ACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGGCCCGACATGTCGGGCCTTCCCCTTGCCAT < 1:42821828/68‑1 AATGAAACCTTCACCACTGAATGGCAAGGGGAAGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCA < 1:20584241/67‑1 ATGAAACCTTCACCATTGAATGGCAAGGGGAAGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAAT < 1:39906012/68‑1 ATGAAACCATCACCATAGAATGGCAAGGGGAAGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAAT < 1:7464200/68‑1 GAAACCTTCACCATTGAATGGCAAGGGGAAGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGG < 1:10522788/68‑1 cACCTTCACCATGGAATGGCACGGGGAAGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGT < 1:15002793/66‑1 AACCTTCACCATTGAATGGCAAGGGGAAGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGT < 1:5622097/67‑1 ACCTTCACCATTGAATGGCAAGGGGAAGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGA > 1:31010510/1‑68 CTTCACCATTGAATGGCAAGGGGAAGGCCCGACATGTCGGGCCTTCCCCGTGCCATTCAATGGTGAAG > 1:42482654/1‑68 ACCATTGAATGGCAAGGGGAAGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTT > 1:15855474/1‑67 CCATTGAATGGCAAGGGGAAGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTC > 1:27813591/1‑68 ATGGCAAGGGGAAGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGT > 1:38554561/1‑68 GGCAAGGGGAAGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTA > 1:888587/1‑67 GCAAGGGGAAGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATTGTGAAGGTTTCATTGCGTAAC > 1:5395842/1‑68 GCAAGGGGAAGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAAC > 1:39376049/1‑68 GGAAGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAG > 1:11000015/1‑67 GAAGCCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGC < 1:8430063/67‑1 GGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGA < 1:41873820/68‑1 GCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAA > 1:28743229/1‑68 GCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAA > 1:22265180/1‑68 GCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAA > 1:23514325/1‑68 GCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAA > 1:43574092/1‑68 GCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGC < 1:33916951/52‑1 CCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAA > 1:36401794/1‑68 CCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGCTTTCATTGCGTAACGCCAGCCAGAAA > 1:12078366/1‑68 CCCGACATGTCGGGCCTTCCCCGTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAA > 1:42991118/1‑68 CCCCACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAA < 1:36664216/67‑1 CCCCACATGCCGGGCCGCCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAA < 1:30234404/67‑1 ACAGGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCCGCCAGAAATGGT > 1:41597956/1‑68 CATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGT < 1:28800297/67‑1 CATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGT > 1:3410872/1‑67 ATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGC < 1:6190749/68‑1 ATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGT > 1:35173588/1‑66 ATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATCGCGTAACGCCAGCCAGAAATGGTGC < 1:18529334/68‑1 ATGTCGGGCCTTCCCCTTGCCATTCAAAGGTGAAGGTTTAATTGCGTAACGCCAGCCAGAAATGGT > 1:20832711/1‑66 CGGGCCTTCCCCTTGCGATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCG < 1:43155462/67‑1 CGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGG > 1:16922313/1‑68 CGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCG < 1:34376355/67‑1 CGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCG < 1:37653627/67‑1 CGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCG < 1:16278886/67‑1 CGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCG < 1:31601475/67‑1 CGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCG < 1:24858703/67‑1 CGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCG < 1:2410514/67‑1 CGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCG < 1:23667244/67‑1 GGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGT > 1:39206484/1‑68 GGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGT < 1:25645143/68‑1 GGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGT < 1:20397723/68‑1 CCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAA > 1:36009889/1‑68 CCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAA > 1:33588614/1‑68 CCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAA > 1:30644694/1‑68 CCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAA > 1:22467317/1‑68 CCTTCCCCTAGCCAATCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGCTGCTCCGTAAA > 1:39480455/1‑68 CTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAG > 1:21864224/1‑68 CTTTACCGAGCACCATTTCTGGCTGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGGCCCGACATGTCGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1238117‑1238033‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcccgacatgtcgggccTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAG > CP009273/1238051‑1238117 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |