| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1260180 | 214 (0.410) | 12 (0.030) | 7/94 | NT | 5.1% | coding (1011/1257 nt) | hemA | glutamyl tRNA reductase |
| ? | CP009273 | = 1260212 | 265 (0.600) | coding (1043/1257 nt) | hemA | glutamyl tRNA reductase | |||||
Only 100 of 206 total aligned reads displayed.
GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGTGGCTGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/1260105‑1260180‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggctgcgaTACTCGCGAATGGTTTCGCTGGCGCTTTGTGCTCGCAGCCACGCCATAAATTCGCTGGTTTCCTGA < CP009273/1260212‑1260147 GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCTCTCAGGAAACCAGCGAATTTATGGCGT > 1:14424970/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:33168525/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:43193957/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:42445658/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:2679302/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT < 1:27012098/68‑1GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:2812696/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:28670846/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:29201377/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:29223408/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:29755755/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:30154698/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:30808307/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:32066243/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:32272026/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:33002567/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:33120477/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:25022518/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:41786900/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:34803272/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:35225527/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:35468428/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:35511864/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:36415289/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:39975219/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:37081200/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:37746140/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:38053512/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:38238710/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:39206795/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:39560493/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:22055770/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:17128325/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:15952894/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:17899488/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:18098962/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:724181/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:6560568/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:15249963/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:19254361/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:1986351/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:14690068/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:6066864/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:884350/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:4880531/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:4784171/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:13196296/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:12753413/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:12495945/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:12176230/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:11835472/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:11483664/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGT > 1:9211634/1‑68GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAAGTTATGGCGT > 1:41281226/1‑68 GTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGTGGCTG < 1:2303191/68‑1 GTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGTGGCTG < 1:23390142/68‑1 GTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGTGGCTG < 1:43111306/68‑1 GTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGTGGCTG < 1:27319853/68‑1 GTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGTGGCTG < 1:17394663/68‑1 GTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGTGGCT > 1:42246575/1‑67 GTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGTGGC < 1:39358872/66‑1 GTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGTGG < 1:25793249/65‑1 AGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGTGGCTGCGA > 1:10871885/1‑67 CTATTGTCGCTCAGGAAACCCGCGAATTTATGGCGTGGCTGCGATACTCGCGAATGGTTTCGCTGGC > 1:14056537/1‑67 GTCGCTCAGGAAACCAGCGAATTTATGGCGTGGCTGCGATACTCGCGAATGGTTTCGCTGGCGCTTTG > 1:35820309/1‑68 CGCTCAGGAAACCAGCGAATTTATGGCGTGGCTGCGGTACTCGGGCATGGTTTCGCTGGCGCGTTGT > 1:42071486/1‑67 CGCTCAGGAAACCAGCGAATTTATGGCGTGGCTGCGATGCTCGCGAATGGTTTCGCTGGCGCTTTGT > 1:30065820/1‑67 CGCTCAGGAAACCAGCGAATTTATGGCGTGGCTGCGATACTCGCGAATGGTTTCGCTGGCGCTTTGT > 1:19007233/1‑67 GGAAACCAGCGAATTTATGGCGTGGCTGCGATACTCGCGAATGGTTTCGCTGGCGCTTTGTGCTCGCA > 1:36540061/1‑68 AGCGAATTTATGGCGTGGCTGCGATACTCGCGAATGGTTTCGCTGGCGCTTTGTGCTCGCAGCCACG > 1:13983652/1‑67 AGCGAATTTATGGCGTGGCTGCGATACTCGCGAATGGTTTCGCTGGCGCTTTGTGCTCGCAGCCACG > 1:43349194/1‑67 CGAATTTATGGCGTGGCTGCGATACTCGCGAATGGTTTCGCTGGCGCTTTGTGCTCGCAGCCACGCCA > 1:25336816/1‑68 GGCGTGGCTGCGATACTCGCGAATGGTTTCGCTGGCGCTTTGTGCTCGCAGCCCCGCCATAAATTC > 1:2853792/1‑66 GGCGTGGCTGCGATACTCGCGAATGGTTTCGCTGGCGCTTTGTGCTCGCAGCCACGCCATAAATTC > 1:10335487/1‑66 GGCGTGGCTGCGATACTCGCGAATGGTTTCGCTGGCGCTTTGTGCTCGCAGCCACGCCATAAATTC > 1:7207633/1‑66 GGCGTGGCTGCGATACTCGCGAATGGTTTCGCTGGCGCTTTGTGCTCGCAGCCACGCCATAAATTC > 1:21404055/1‑66 CGTGGCTGCGATACTCGCGAATGGTTTCGCTGGCGCTTTGTGCTCGCAGCCACGCCATAAATTCGCTG > 1:20986699/1‑68 aGCTGCGATACTCGCGAATGGTTTCGCTGGCGCTTTGTGCTCGCAGCCACGCCATAAATTCGCTGGTT < 1:21084861/67‑1 GGCTGCGATACTCGCGAATGGTTTCGCTGGCGCTTTGTGCTCGCAGCCACGCCATAAATTCGCTGGTT < 1:34829115/68‑1 GGCTGCGATACTCGCGAATGGTTTCGCTGGCGCTTTGTGCTCGCAGCCACGCCATAAATTCGCTGGTT < 1:33727240/68‑1 GGCTGCGATACTCGCGAATGGTTTCGCTGGCGCTTTGTGCTCGCAGCCACGCCATAAATTCGCTGGTT < 1:27264312/68‑1 GGCTGCGATACTCGCGAATGGTTTCGCTGGCGCTTTGTGCTCGCAGCCACGCCATAAATTCGCTGGTT < 1:42696571/68‑1 GCTGCGATACTCGCGAATGGTTTCGCTGGCGCTTTGTGCTCGCAGCCACGCCATAAATTCGCTGGTT > 1:9386025/1‑67 GCTGCGATACTCGCGAATGGTTTCGCTGGCGCTTTGTGCTCGCAGCCACGCCATAAATTCGCTGGTT > 1:5231759/1‑67 TGCGATACTCGCGAATGGTTTCGCTGGCGCTTTGTGCTCGCAGCCCCGCCATAAATTAGCTGGTTT > 1:244840/1‑66 TGCGATACTCGCGAATGGTTTCGCTGGCGCTTTGTGCTCGCAGCCACGCCATAAATTCGCTGGTTTC < 1:9590306/67‑1 TGCGATACTCGCGAATGGTTTCGCTGGCGCTTTGTGCTCGCAGCCACGCCATAAATTCGCTGGTTT > 1:21792273/1‑66 TGCGATACTCGCGAATGGTTTCGCTGGCGCTTTGTGCTCGCAGCCACGCCATAAATTCGCTGGTTT > 1:23982564/1‑66 TGCGATACTCGCGAATGGTTTCGCTGGCGCTTTGTGCTCGCAGCCACGCCATAAATTCGCTGGTTT > 1:24668835/1‑66 TGCGATACTCGCGAATGGTTTCGCTGGCGCTTTGTGCTCGCAGCCACGCCATAAATTCGCTGGTTT > 1:6347962/1‑66 TGCGATACTCGCGAATGGTTTCGCTGGCGCTTTGTGCTCGCAGCCACGCCATAAATTCGCTGGTTT > 1:18403164/1‑66 TGCGATACTCGCGAATGGTTTCGCTGGCGCTTTGTGCTCGCAGCCACGCCATAAATTCGCTGGTTT > 1:17730650/1‑66 TGCGATACTCGCGAATGGTTTCGCTGGCGCTTTGTGCTCGCAGCCACGCCATAAATTCGCTGGTTT > 1:15913127/1‑66 TGCGATACTCGCGAATGGTTTCGCTGGCGCTTTGTGCTCGCAGCCACGCCATAAATTCGCTGGTTT > 1:14144742/1‑66 TGCGATACTCGCGAATGGTTTCGCTGGCGCTTTGTGCTCGCAGCCACGCCATAAATTCGCTGGTTT > 1:9104381/1‑66 TGCGATACTCGCGAATGGTTTCGCTGGCGCTTTGTGCTCGCAGCCACGCCATAAATTCGCTGGTTT > 1:10042717/1‑66 TGCGATACTCGCGAATGGTTTCGCTGGCGCTTTGTGCTCGCAGCCACGCCATAAATTCGCTGGTTT > 1:40446531/1‑66 TGCGATACTCGCGAATGGTTTCGCTGGCGCTTTGTGCTCGCAGCCACGCCATAAATTCGCTGGTTT > 1:36784984/1‑66 TGCGATACTCGCGAATGGTTTCGCTGGCGCTTTGTGCTCGCAGCCACGCCATAAATTCGCGGGTTT > 1:6962407/1‑66 GCGATACTCGCGAATGGTTTCGCTGGCGCTTTGTGCTCGCAGCCACGCCATAAATTCGCTGGTTTCCT < 1:22566801/68‑1 GCAGCGTAAAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGTGGCTGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/1260105‑1260180‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggctgcgaTACTCGCGAATGGTTTCGCTGGCGCTTTGTGCTCGCAGCCACGCCATAAATTCGCTGGTTTCCTGA < CP009273/1260212‑1260147 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |