New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 1260180214 (0.410)12 (0.030) 7/94 NT 5.1% coding (1011/1257 nt) hemA glutamyl tRNA reductase
?CP009273 = 1260212 265 (0.600)coding (1043/1257 nt) hemA glutamyl tRNA reductase

Only 100 of 404 total aligned reads displayed.

AAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTA  >  CP009273/1260113‑1260246
                                                                   |                                                                  
 aGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGTGGCTGCGAg                                                                   <  1:2981268/68‑1 (MQ=255)
  gCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGTGGCTGCGAGc                                                                  >  1:27669655/1‑68 (MQ=255)
  gCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGTGGCTGCGAGc                                                                  >  1:18365444/1‑68 (MQ=255)
  gCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGTGGCTGCGAGc                                                                  >  1:37960736/1‑68 (MQ=255)
  gCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGTGGCTGCGAGc                                                                  >  1:21031437/1‑68 (MQ=255)
        gCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGTGGCTGCGAGCACaaa                                                             >  1:2030713/1‑67 (MQ=255)
          ggTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGTGGCTGCGAGCACaaa                                                             <  1:1140812/65‑1 (MQ=255)
             tGAGCCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCa                                                       <  1:19041705/68‑1 (MQ=255)
               aGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGc                                                     >  1:35850958/1‑68 (MQ=255)
                ggCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGc                                                     <  1:32137406/67‑1 (MQ=255)
                 gCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGa                                                   >  1:36743832/1‑68 (MQ=255)
                  cGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGaa                                                  >  1:35199659/1‑68 (MQ=255)
                       aCTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCAt                                             >  1:28271466/1‑68 (MQ=255)
                        cTATTGTCGCTCAGGAAACCCGCGAATTTATGGCGTGGCTGCGAtactcgcgaatggtttcgctggc                                             >  1:14056537‑M1/1‑44 (MQ=255)
                            tGTCGCTCAGGAAACCAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTcgcg                                        >  1:1754797/1‑68 (MQ=255)
                             gTCGCTCAGGAAACCAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGa                                       >  1:38736215/1‑68 (MQ=255)
                             gTCGCTCAGGAAACCAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGa                                       >  1:8730277/1‑68 (MQ=255)
                             gTCGCTCAGGAAACCAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGa                                       >  1:6025518/1‑68 (MQ=255)
                              tCGCTCAGGAAACCAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAg                                      >  1:42446736/1‑68 (MQ=255)
                              tCGCTCAGGAAACCAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAg                                      >  1:13671931/1‑68 (MQ=255)
                               cGCTCAGGAAACCAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGt                                     <  1:10093612/68‑1 (MQ=255)
                               cGCTCAGGAAACCAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGt                                     >  1:20847287/1‑68 (MQ=255)
                               cGCTCAGGAAACCAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGt                                     >  1:31245849/1‑68 (MQ=255)
                               cGCTCAGGAAACCAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGt                                     <  1:34253800/68‑1 (MQ=255)
                               cGCTCAGGAAACCAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGt                                     >  1:14149754/1‑68 (MQ=255)
                               cGCTCAGGAAACCAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGt                                     >  1:42899406/1‑68 (MQ=255)
                               cGCTCAGGAAACCAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGt                                     >  1:8055403/1‑68 (MQ=255)
                                    aGGAAACCAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTAtcgc                                <  1:22566801‑M2/68‑5 (MQ=255)
                                      gAAACCAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTAtcgca                               <  1:9590306‑M2/67‑6 (MQ=255)
                                       aacccAGCGAATTTATGGCGTGGCTGCGAGCAC‑AAGCGCCAGCGAAACCATTCGCGAGTATCGCa                               <  1:15404497/62‑1 (MQ=255)
                                       aaaCCAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTAtcgcag                              <  1:42175739‑M2/67‑7 (MQ=255)
                                       aaaCCAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTAtcgca                               >  1:30994382‑M2/1‑61 (MQ=255)
                                       aaaCCAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTAtcgca                               >  1:43158568‑M2/1‑61 (MQ=255)
                                       aaaCCAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTAtcgca                               >  1:43099185‑M2/1‑61 (MQ=255)
                                       aaaCCAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTAtcgca                               >  1:6524078‑M2/1‑61 (MQ=255)
                                       aaaCCAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTAtcgca                               >  1:34829032‑M2/1‑61 (MQ=255)
                                       aaaCCAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTAtcgca                               >  1:15913127‑M2/1‑61 (MQ=255)
                                       aaaCCAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTAtcgca                               >  1:6912506‑M2/1‑61 (MQ=255)
                                       aaaCCAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTAtcgca                               >  1:24668835‑M2/1‑61 (MQ=255)
                                       aaaCCAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTAtcgca                               >  1:9104381‑M2/1‑61 (MQ=255)
                                       aaaCCAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTAtcgca                               >  1:21792273‑M2/1‑61 (MQ=255)
                                        aaCCAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTAtcgcagc                             >  1:9386025‑M2/1‑60 (MQ=255)
                                          ccAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAg                          <  1:10605576/68‑1 (MQ=255)
                                          ccAGCGAATTTATGGCCTGGCTGCGAGCACAAAGCGCCAGCGAAACCAATCGCGAGTATCGCAGCCAg                          >  1:21206449/1‑68 (MQ=255)
                                           cAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTAtcgcagccacg                         >  1:22259798‑M2/1‑57 (MQ=255)
                                            aGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGc                        >  1:37492624/1‑68 (MQ=255)
                                            aGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGc                        >  1:7257626/1‑68 (MQ=255)
                                               gAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTAtcgcagccacgcc                       >  1:14511729‑M2/1‑53 (MQ=255)
                                               gAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTAtcgcagccacgcc                       >  1:10335487‑M2/1‑53 (MQ=255)
                                               gAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGc                        <  1:43636131/65‑1 (MQ=255)
                                               gAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCaga                     <  1:43293662/68‑1 (MQ=255)
                                               gAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCaga                     <  1:40516965/68‑1 (MQ=255)
                                               gAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCaga                     <  1:28624035/68‑1 (MQ=255)
                                               gAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCaga                     <  1:25934843/68‑1 (MQ=255)
                                               gAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCaga                     <  1:21475854/68‑1 (MQ=255)
                                               gAATTTATGGCGGGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTAtcgcagccacgcc                       >  1:27315125‑M2/1‑53 (MQ=255)
                                                    tATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAg                <  1:39607967/68‑1 (MQ=255)
                                                    tATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAg                <  1:32860093/68‑1 (MQ=255)
                                                     aTGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGt               <  1:34731195/68‑1 (MQ=255)
                                                      tGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTAtcgcagccacgccataaattcg              >  1:25336816‑M2/1‑46 (MQ=255)
                                                       ggCGTGGCTGCGCGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTc             >  1:16381858/1‑68 (MQ=255)
                                                       ggCGTGGCTGCGAtactcgcgaatggtttcgctggcgctttgtgctcgcagccacgccataaattc               >  1:25223015‑M1/1‑13 (MQ=255)
                                                       ggCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTc             >  1:19330301/1‑68 (MQ=255)
                                                       ggCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTc             >  1:40103620/1‑68 (MQ=255)
                                                       ggCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTc             >  1:41551810/1‑68 (MQ=255)
                                                       ggCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTc             >  1:2940463/1‑68 (MQ=255)
                                                       ggCGCGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTc             >  1:31854125/1‑68 (MQ=255)
                                                        gCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTc             >  1:5663734/1‑67 (MQ=255)
                                                        gCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTc             >  1:11102106/1‑67 (MQ=255)
                                                         cGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTAtcgcagccacgccataaattcgct            >  1:43349194‑M2/1‑43 (MQ=255)
                                                         cGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTcgc           >  1:1269482/1‑68 (MQ=255)
                                                         cGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTcgc           >  1:7082070/1‑68 (MQ=255)
                                                         cGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTcgc           >  1:36265491/1‑68 (MQ=255)
                                                         cGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTcgc           >  1:36953963/1‑68 (MQ=255)
                                                         cGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTcgc           >  1:24280093/1‑68 (MQ=255)
                                                         cGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTcg            <  1:3035006/67‑1 (MQ=255)
                                                            ggCTGCGAtactcgcgaatggtttcgctggcgctttgtgctcgcagccacgccataaattcgctggtt        <  1:41425166‑M1/68‑61 (MQ=255)
                                                            ggCTGCGAtactcgcgaatggtttcgctggcgctttgtgctcgcagccacgccataaattcgctggtt        <  1:42696571‑M1/68‑61 (MQ=255)
                                                            ggCTGCGAtactcgcgaatggtttcgctggcgctttgtgctcgcagccacgccataaattcgctggtt        <  1:33727240‑M1/68‑61 (MQ=255)
                                                            ggCTGCGAtactcgcgaatggtttcgctggcgctttgtgctcgcagccacgccataaattcgctggtt        <  1:27264312‑M1/68‑61 (MQ=255)
                                                             gCTGCGAtactcgcgaatggtttcgctggcgctttgtgctcgcagccacgccataaattcgctggtt        >  1:5231759‑M1/1‑7 (MQ=255)
                                                             gCTGCGAGCACAAAGCGCCAGCGAAGCCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATg       >  1:18532454/1‑68 (MQ=255)
                                                              cTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATg       <  1:41063464/67‑1 (MQ=255)
                                                              cTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATg       <  1:26631582/67‑1 (MQ=255)
                                                              cTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGa      >  1:26069560/1‑68 (MQ=255)
                                                               tGCGAtactcgcgcatggtttcgctggcgctttgtgctcgcagccccgccataaattcgctggtgt       >  1:36471717‑M1/1‑5 (MQ=255)
                                                               tGCGAtactcgcgaatggtttcgctggcgctttgtgctcgcagccacgccataaattcgctggttt       >  1:10042717‑M1/1‑5 (MQ=255)
                                                               tGCGAtactcgcgaatggtttcgctggcgctttgtgctcgcagccacgccataaattcgctggttt       >  1:6347962‑M1/1‑5 (MQ=255)
                                                               tGCGAtactcgcgaatggtttcgctggcgctttgtgctcgcagccacgccataaattcgctggttt       >  1:17836138‑M1/1‑5 (MQ=255)
                                                               tGCGAtactcgcgaatggtttcgctggcgctttgtgctcgcagccacgccataaattcgctggttt       >  1:17149616‑M1/1‑5 (MQ=255)
                                                               tGCGAtactcgcgaatggtttcgctggcgctttgtgctcgcagccacgccataaattcgctggttt       >  1:33122668‑M1/1‑5 (MQ=255)
                                                               tGCGAtactcgcgaatggtttcgctggcgctttgtgctcgcagccacgccataaattcgctggttt       >  1:11821632‑M1/1‑5 (MQ=255)
                                                               tGCGAtactcgcgaatggtttcgctggcgctttgtgctcgcagccacgccataaattcgctggttt       >  1:15048775‑M1/1‑5 (MQ=255)
                                                               tGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGa      <  1:22884418/67‑1 (MQ=255)
                                                               tGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAg     >  1:30607813/1‑68 (MQ=255)
                                                               tGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAg     >  1:18219001/1‑68 (MQ=255)
                                                               tGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAg     >  1:26363005/1‑68 (MQ=255)
                                                               tGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAg     >  1:23944651/1‑68 (MQ=255)
                                                                 cGAtactcgcgaatggtttcgctggcgctttgtgctcgcagccacgccataaattcgctggtttcctg   >  1:36682426‑M1/1‑3 (MQ=255)
                                                                  gAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGGGtt   <  1:12984687/67‑1 (MQ=255)
                                                                   |                                                                  
AAGCCGCAGCGGTTGAGGCGGAAACTATTGTCGCTCAGGAAACCAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTA  >  CP009273/1260113‑1260246

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.