| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1260180 | 214 (0.410) | 12 (0.030) | 7/94 | NT | 5.1% | coding (1011/1257 nt) | hemA | glutamyl tRNA reductase |
| ? | CP009273 | = 1260212 | 265 (0.600) | coding (1043/1257 nt) | hemA | glutamyl tRNA reductase | |||||
Only 100 of 402 total aligned reads displayed.
GCTCAGGAAACCAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGCCAAAGCGTTAGCGGCCCTTGAGCAGGGC > CP009273/1260145‑1260279 | gAAACCAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTAtcgca < 1:9590306‑M2/67‑6 (MQ=255) acaccAGCGAATTTATGGCGGGGCTGCGAGCACAAAGCGCCAGCGAAACCATGCGCGAGTAtcgca > 1:36471717‑M2/3‑61 (MQ=255) aaaCCCGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTAtcgca > 1:6962407‑M2/1‑61 (MQ=255) aaaCCAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTAtcgca > 1:40446531‑M2/1‑61 (MQ=255) aaaCCAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTAtcgca > 1:17730650‑M2/1‑61 (MQ=255) aaaCCAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTAtcgca > 1:6347962‑M2/1‑61 (MQ=255) aaaCCAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTAtcgca > 1:17149616‑M2/1‑61 (MQ=255) aaaCCAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTAtcgca > 1:21792273‑M2/1‑61 (MQ=255) aaaCCAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTAtcgca > 1:43099185‑M2/1‑61 (MQ=255) aaaCCAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTAtcgca > 1:36784984‑M2/1‑61 (MQ=255) aaaCCAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTAtcgca > 1:14144742‑M2/1‑61 (MQ=255) aaaCCAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTAtcgca > 1:24668835‑M2/1‑61 (MQ=255) ccAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAg > 1:13647901/1‑68 (MQ=255) ccAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAg < 1:228418/68‑1 (MQ=255) ccAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAg < 1:10605576/68‑1 (MQ=255) gAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCGGCCAGGCaga < 1:23190638/68‑1 (MQ=255) gAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCaga < 1:25934843/68‑1 (MQ=255) gAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCaga < 1:28624035/68‑1 (MQ=255) gAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCaga < 1:21475854/68‑1 (MQ=255) gAATTTATGGCGGGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTAtcgcagccacgcc > 1:27315125‑M2/1‑53 (MQ=255) tATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAg < 1:20289650/68‑1 (MQ=255) tATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAg < 1:32860093/68‑1 (MQ=255) ggCGTGGCTGCGAGCACAAAGCGCCAGGGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTc > 1:18530175/1‑68 (MQ=255) ggCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTc > 1:37698583/1‑68 (MQ=255) ggCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTc > 1:38013287/1‑68 (MQ=255) ggCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTAGCGAGTATCGCAGCCAGGCAGAGCAAGTTc > 1:34827133/1‑68 (MQ=255) cGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCCGCCAGGCAGAGCAAGTTagc > 1:16122509/1‑68 (MQ=255) cGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTcgc > 1:5005428/1‑68 (MQ=255) cGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTcgc > 1:1269482/1‑68 (MQ=255) cGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTcgc > 1:19066324/1‑68 (MQ=255) cGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTcgc > 1:24280093/1‑68 (MQ=255) cGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTcgc > 1:36265491/1‑68 (MQ=255) cGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTcg < 1:12174015/67‑1 (MQ=255) cGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGACAGAGCAAGTTcgc > 1:11207199/1‑68 (MQ=255) gTGGCGGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTcgc < 1:7589091/67‑1 (MQ=255) cTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATg < 1:41063464/67‑1 (MQ=255) cTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGa > 1:26069560/1‑68 (MQ=255) tGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGa < 1:26428183/67‑1 (MQ=255) tGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAg > 1:18219001/1‑68 (MQ=255) gAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGGGtt < 1:12984687/67‑1 (MQ=255) gAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGtt < 1:33737164/67‑1 (MQ=255) gAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGtt < 1:34040914/67‑1 (MQ=255) aGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTa > 1:21102054/1‑67 (MQ=255) aGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTa > 1:41529118/1‑67 (MQ=255) gCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTaa < 1:31143072/67‑1 (MQ=255) gCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTaa > 1:37261866/1‑67 (MQ=255) acaAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAAcc < 1:26250644/67‑1 (MQ=255) acaAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAAcc < 1:4265755/67‑1 (MQ=255) acaAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAAcc < 1:22541577/67‑1 (MQ=255) caAAGCGCCAGCGAAACCATTCGCGAGTAtcgcagccacgccataaattcgctggtttcctgagcgac > 1:35820309‑M2/1‑29 (MQ=255) caAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGc < 1:25441185/68‑1 (MQ=255) caAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGc < 1:25091014/68‑1 (MQ=255) caAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGc < 1:15453239/68‑1 (MQ=255) aaGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGCCa > 1:38712036/1‑68 (MQ=255) gcCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGCCAAAg < 1:31596012/67‑1 (MQ=255) gcCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGCCAAAg < 1:5238450/67‑1 (MQ=255) gcCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGCCAAAg < 1:1170254/67‑1 (MQ=255) gcCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGCCAAAGc < 1:1509209/68‑1 (MQ=255) gcCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAATTCGCGATGAGTTAACCGCCAAAGc < 1:13909204/68‑1 (MQ=255) ccAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGCCAAAGCg > 1:27400115/1‑68 (MQ=255) ccAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGCCAAAGCg > 1:30728166/1‑68 (MQ=255) ccAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGCCAAAGCg > 1:33921448/1‑68 (MQ=255) cGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGCCAAAGCGTTa > 1:10765149/1‑67 (MQ=255) cGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGCCAAAGCGTTa > 1:10028889/1‑67 (MQ=255) gAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGCCAAAGCGTTAg < 1:31957731/67‑1 (MQ=255) aCCATTCGAGAGTATCGCAGCCAGGCAGAGCAAGTTCTCGATGAGTTAACCGCCAAAGCGTTAGCGGc < 1:10248846/68‑1 (MQ=255) ccATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGCCAAAGCGTTAGCGGcc < 1:14655018/68‑1 (MQ=255) ccATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGCCAAAGCGTTAGCGGcc < 1:33245444/68‑1 (MQ=255) ccATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGCCAAAGCGTTAGCGGcc < 1:9322646/68‑1 (MQ=255) ccATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGCCAAAGCGTTAGCGGcc < 1:8466361/68‑1 (MQ=255) ccATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGCCAAAGCGTTAGCGGcc < 1:43631239/68‑1 (MQ=255) ccATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGCCAAAGCGTTAGCGGcc < 1:43318054/68‑1 (MQ=255) ccATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGCCAAAGCGTTAGCGGcc < 1:43225923/68‑1 (MQ=255) ccATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGCCAAAGCGTTAGCGGcc < 1:39713826/68‑1 (MQ=255) ccATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGCCAAAGCGTTAGCGGcc < 1:28937320/68‑1 (MQ=255) ccATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGCCAAAGCGTTAGCGGcc < 1:40724725/68‑1 (MQ=255) ccATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGCCAAAGCGTTAGCGGc > 1:30384732/1‑67 (MQ=255) ccATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGCCAAAGCGTTAGCGGc > 1:27994330/1‑67 (MQ=255) cATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGCCAAAGCGTTAGCGGc > 1:34462290/1‑66 (MQ=255) aTTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGCCAAAGCGTTAGCGGCCCt < 1:26697194/68‑1 (MQ=255) aTTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGCCAAAGCGTTAGCGGCCCt < 1:42072378/68‑1 (MQ=255) aTTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGCCAAAGCGTTAGCGGCCCt < 1:17377533/68‑1 (MQ=255) cgcgAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGCCAAAGCGTTAGCGGCCCTTGa < 1:29891082/68‑1 (MQ=255) cgAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGCCAAAGCGTTAGCGGCCCTTGAGc > 1:3931862/1‑68 (MQ=255) cgAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGCCAAAGCGTTAGCGGCCCTGGAGc > 1:22692756/1‑68 (MQ=255) gAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGCCAAAGCGTTAGCGGCCCTTGAGc < 1:15637303/67‑1 (MQ=255) gAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGCCAAAGCGTTAGCGGCCCTTGAGCa > 1:40163915/1‑68 (MQ=255) aGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGCCAAAGCGTTAGCGGCCCTTGAGCAg > 1:30573017/1‑68 (MQ=255) aTCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGCCAAAGCGTTAGCGGCCCTTGAGCAgg < 1:35221118/66‑1 (MQ=255) aTCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGCCAAAGCGTTAGCGGCCCTTGAGCAgg < 1:8865323/66‑1 (MQ=255) aTCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGCCAAAGCGTTAGCGGCCCTTGAGCAgg < 1:7216940/66‑1 (MQ=255) aTCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGCCAAAGCGTTAGCGGCCCTTGAGCAgg < 1:1656898/66‑1 (MQ=255) aTCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGCCAAAGCGTTAGCGGCCCTTGAGCAgg < 1:6620132/66‑1 (MQ=255) aTCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGCCAAAGCGTTAGCGGCCCTTGAGCAgg < 1:5945158/66‑1 (MQ=255) aTCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGCCAAAGCGTTAGCGGCCCTTGAGCAgg < 1:19686494/66‑1 (MQ=255) aTCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGCCAAAGCGTTAGCGGCCCTTGAGCAgg < 1:20754385/66‑1 (MQ=255) aTCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGCCAAAGCGTTAGCGGCCCTTGAGCAgg < 1:29496637/66‑1 (MQ=255) aTCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGCCAAAGCGTTAGCGGCCCTTGAGCAgg < 1:39556668/66‑1 (MQ=255) aTCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGCCAAAGCGTTAGCGGCCCTTGAGCAgg < 1:22192741/66‑1 (MQ=255) aTCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGCCAAAGCGTTAGCGGCCCTTGAGCAgg < 1:42560855/66‑1 (MQ=255) | GCTCAGGAAACCAGCGAATTTATGGCGTGGCTGCGAGCACAAAGCGCCAGCGAAACCATTCGCGAGTATCGCAGCCAGGCAGAGCAAGTTCGCGATGAGTTAACCGCCAAAGCGTTAGCGGCCCTTGAGCAGGGC > CP009273/1260145‑1260279 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |