| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1685627 = | 289 (0.550) | 13 (0.030) | 5/88 | NT | 5.4% | intergenic (+10/+216) | ydgA/uidC | DUF945 family protein/putative outer membrane porin for beta‑glucuronides porin protein |
| ? | CP009273 | 1685659 = | NA (NA) | intergenic (+42/+184) | ydgA/uidC | DUF945 family protein/putative outer membrane porin for beta‑glucuronides porin protein | |||||
Only 100 of 149 total aligned reads displayed.
CTGATAAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1685704‑1685627‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctccggcgttttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACAC > CP009273/1685659‑1685725 CTGATAAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTC > 1:24599173/1‑67CTGATAAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTC > 1:24649534/1‑67CTGATAAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTC > 1:26592108/1‑67CTGATAAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTC > 1:42955136/1‑67 TGATAAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCT > 1:8222076/1‑67 TGATAAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCT > 1:6349422/1‑67 TAAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCTGAGTGAAAATTCTCag > 1:27774992/1‑65 TAAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGG < 1:18223033/68‑1 TAAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCG > 1:18037762/1‑67 TAAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCG > 1:26118261/1‑67 TAAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCG > 1:31182809/1‑67 TAAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCG > 1:32652567/1‑67 TAAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCG > 1:37570565/1‑67 TAAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCG > 1:10702398/1‑67 TAAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCG > 1:6537693/1‑67 TAAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCG > 1:541235/1‑67 AAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGC > 1:10462895/1‑68 AAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGC > 1:13935547/1‑68 AAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGC > 1:36233398/1‑68 AGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCG > 1:20324461/1‑68 AGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCG < 1:449109/68‑1 AGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCG < 1:43584727/68‑1 AGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCG > 1:38166804/1‑68 AGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCG < 1:40237049/68‑1 AGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATACTCAGGCG > 1:24816482/1‑68 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT > 1:36117509/1‑68 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT > 1:43037755/1‑68 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT > 1:41268042/1‑68 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT > 1:2795004/1‑68 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT > 1:28735567/1‑68 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT > 1:27430553/1‑68 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT > 1:7747949/1‑68 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT > 1:25786913/1‑68 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT > 1:25340125/1‑68 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT > 1:39054956/1‑68 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT > 1:20092055/1‑68 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT > 1:12949966/1‑68 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT > 1:1329161/1‑68 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT > 1:14906113/1‑68 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT > 1:20982161/1‑68 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT > 1:11932164/1‑68 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT > 1:20114235/1‑68 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT > 1:22536219/1‑68 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT > 1:22813055/1‑68 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT > 1:16331071/1‑68 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT > 1:16652986/1‑68 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT > 1:2300887/1‑68 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT > 1:16798393/1‑68 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT > 1:19899546/1‑68 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT > 1:24348490/1‑68 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTT < 1:13906678/67‑1 GTAGCGCATCAGGCAATCTCTGGTTTGTTTGCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT > 1:20589832/1‑68 GCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTTTCA < 1:39467479/66‑1 AATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTTTCATCTGAAAACAA < 1:36589843/68‑1 AATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTTTCATCTGAAAACAA < 1:29979802/68‑1 ATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTTTCATCTGAAAACAAA < 1:2674444/68‑1 TGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTTTCATCTGAAAACAAACCAGA < 1:29850841/68‑1 TGGGTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTTTCATCTGAAAACAAACCAGA < 1:24956881/68‑1 GGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTTTCATCTGAAAACAAACCAGAG < 1:35069380/68‑1 GTTTTCAGCTGAAAACGCCGGAGTGAAAAATCTCCGGCGTTTGCATCTGAAAACAAACCAGAGATTGC < 1:16390862/68‑1 GTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGC < 1:5916027/68‑1 GTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGC < 1:10312443/68‑1 CTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGTTGCGCTACGCTTATCAGGCCTACCTTT < 1:5741946/68‑1 CTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTT > 1:21964579/1‑68 CTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTT > 1:6582058/1‑68 CTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCATACCTTT > 1:11351532/1‑68 TCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGCTGCGCTACGCTTATCAGGCCTACCTTTT < 1:7773656/68‑1 TCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTT < 1:24641401/68‑1 CCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTC < 1:19339512/68‑1 CCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTC < 1:37374626/68‑1 CCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTC < 1:2409306/68‑1 CCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTC < 1:2997033/68‑1 CCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTC < 1:33292091/68‑1 CCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTT > 1:28943402/1‑67 tttGTTTTCATCTGAAATCAAACCAGAGATTGCCTGATGCGCTCCGCTTATCAGGCGTACCTTTT > 1:2533481/4‑65 GGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCT < 1:34487678/68‑1 GGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCT < 1:34471060/68‑1 GGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCT < 1:12777504/68‑1 GGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCT < 1:32787720/68‑1 GGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTT > 1:21515713/1‑65 GTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCA > 1:19498452/1‑68 GTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGC < 1:42892681/67‑1 TTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAAC > 1:15469410/1‑68 TTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAAC > 1:39540898/1‑68 TTCATCTGAAAACAAACCAGAGATTGCCTGATGCTCTACGCTTATCAGGCCTACCTTTTCCTGCAACA < 1:39101292/68‑1 TTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACA < 1:9157799/68‑1 TTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACA < 1:30786718/68‑1 TTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACA < 1:33802904/68‑1 TCATCTGAAAACAAACCCGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACAC < 1:928716/68‑1 TCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACAC < 1:30953386/68‑1 TCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACAC < 1:24035473/68‑1 TCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACAC < 1:8245539/68‑1 TCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACAC < 1:11369910/68‑1 TCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACAC < 1:23006243/68‑1 TCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACAC < 1:29460306/68‑1 TCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACAC < 1:30796679/68‑1 TCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACAC < 1:41695495/68‑1 TCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACAC < 1:40207249/68‑1 TCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACAC < 1:34963181/68‑1 TCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATAAGGCCTACCTTTTCCTGCAACAC < 1:42903584/68‑1 CTGATAAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1685704‑1685627‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctccggcgttttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACAC > CP009273/1685659‑1685725 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |