New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 1685627 =289 (0.550)13 (0.030) 5/88 NT 5.4% intergenic (+10/+216) ydgA/uidC DUF945 family protein/putative outer membrane porin for beta‑glucuronides porin protein
?CP009273 1685659 = NA (NA)intergenic (+42/+184) ydgA/uidC DUF945 family protein/putative outer membrane porin for beta‑glucuronides porin protein

Only 100 of 419 total aligned reads displayed.

CTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACT  >  CP009273/1685592‑1685726
                                                                   |                                                                   
cTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTc                                                                     >  1:10138583/1‑68 (MQ=255)
cTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTc                                                                     >  1:22026320/1‑68 (MQ=255)
 tGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCa                                                                    >  1:39685305/1‑68 (MQ=255)
 tGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCa                                                                    >  1:36274025/1‑68 (MQ=255)
    aCCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCa                                                                    >  1:9381121/1‑65 (MQ=255)
    aCCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCa                                                                    >  1:15754761/1‑65 (MQ=255)
    aCCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATc                                                                  <  1:10452809/67‑1 (MQ=255)
    aCCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATc                                                                  <  1:34726318/67‑1 (MQ=255)
    aCCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATc                                                                  <  1:25253812/67‑1 (MQ=255)
      cGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGa                                                               >  1:18628604/1‑68 (MQ=255)
       ggCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaa                                                              <  1:1721884/68‑1 (MQ=255)
         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                                                             >  1:27957101/1‑67 (MQ=255)
         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                                                             >  1:13891529/1‑67 (MQ=255)
         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                                                             >  1:29418265/1‑67 (MQ=255)
         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                                                             >  1:39009814/1‑67 (MQ=255)
         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                                                             >  1:20738241/1‑67 (MQ=255)
         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                                                             >  1:39434279/1‑67 (MQ=255)
         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                                                             >  1:40114101/1‑67 (MQ=255)
          gcaatctctggtttgttttcagatgCAAACGCCGGAGATTTTTCACTCCGGCGTTTTCAGCTGAaaac                                                           <  1:16390862‑M1/43‑1 (MQ=255)
            ttCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaa                                                         <  1:26704043/68‑1 (MQ=255)
            ttCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaa                                                         <  1:34455998/68‑1 (MQ=255)
            ttCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaa                                                         <  1:22608350/68‑1 (MQ=255)
             tCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaa                                                        <  1:19176071/68‑1 (MQ=255)
             tCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaa                                                        <  1:43073225/68‑1 (MQ=255)
              ccGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaa                                                        >  1:20999840/1‑67 (MQ=255)
                gcagcaGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCa                                                     >  1:6968165/1‑68 (MQ=255)
                  tggtttgttttcagatgaaaacgccggagtgaaaattctccggcgttttCATCTGAAAACAAACCaga                                                   <  1:29850841‑M2/19‑1 (MQ=255)
                  tgggttgttttcagatgaaaacgccggagtgaaaattctccggcgttttCATCTGAAAACAAACCaga                                                   <  1:24956881‑M2/19‑1 (MQ=255)
                     tttgttttcagatgAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGAt                                                <  1:17447399‑M1/54‑1 (MQ=255)
                     agTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCaga                                                   <  1:33855684/65‑1 (MQ=255)
                      ttgttttcagatgAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGAtt                                               <  1:29979802‑M1/55‑1 (MQ=255)
                        aaTTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGAt                                                <  1:4494355/65‑1 (MQ=255)
                        aaTTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg                                              <  1:15172081/67‑1 (MQ=255)
                        aaTTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg                                              <  1:24601404/67‑1 (MQ=255)
                        aaTTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGc                                             <  1:142095/68‑1 (MQ=255)
                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg                                              >  1:35654166/1‑65 (MQ=255)
                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg                                              >  1:8183681/1‑65 (MQ=255)
                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg                                              >  1:36580116/1‑65 (MQ=255)
                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg                                              >  1:38062671/1‑65 (MQ=255)
                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg                                              >  1:21352667/1‑65 (MQ=255)
                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg                                              >  1:17793438/1‑65 (MQ=255)
                           tCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTg                                          >  1:10977989/1‑68 (MQ=255)
                            cACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGa                                         <  1:42632664/68‑1 (MQ=255)
                            cACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGa                                         >  1:36400261/1‑68 (MQ=255)
                             aCGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGAt                                        >  1:33472069/1‑68 (MQ=255)
                             aCGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGAt                                        >  1:6011891/1‑68 (MQ=255)
                              cGGCCAAAACGCCGGAGAATTTTCACTACGGCGTTTTCATCTGAAAAAAAACCAGAGATTGCCTGATg                                       <  1:24266590/68‑1 (MQ=39)
                               ggCCACAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc                                      <  1:2246207/68‑1 (MQ=255)
                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc                                      <  1:36986156/68‑1 (MQ=255)
                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc                                      <  1:29590853/68‑1 (MQ=255)
                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc                                      <  1:1157304/68‑1 (MQ=255)
                                  cAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgcgc                                    <  1:41906315/67‑1 (MQ=255)
                                    AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc                                 >  1:12878554‑M1/1‑68 (MQ=255)
                                    AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc                                 >  1:11854132‑M1/1‑68 (MQ=255)
                                    AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc                                 >  1:19899546‑M1/1‑68 (MQ=255)
                                    AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc                                 >  1:20114235‑M1/1‑68 (MQ=255)
                                    AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc                                 >  1:27430553‑M1/1‑68 (MQ=255)
                                    AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATATGAAAACAAACCAGAGATTGCCTGATGCGCTAc                                 >  1:3327837‑M1/1‑68 (MQ=255)
                                        GCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCtt                             >  1:35975091‑M1/1‑68 (MQ=255)
                                          ctGAGAATTTTCACTCAGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTa                            >  1:27774992‑M1/3‑67 (MQ=255)
                                          CGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTa                            >  1:22978750‑M1/1‑67 (MQ=255)
                                          CGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTa                            >  1:541235‑M1/1‑67 (MQ=255)
                                          CGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTa                            >  1:37570565‑M1/1‑67 (MQ=255)
                                          CGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTa                            >  1:24032882‑M1/1‑67 (MQ=255)
                                          CGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTa                            >  1:32652567‑M1/1‑67 (MQ=255)
                                          CGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTa                            >  1:31182809‑M1/1‑67 (MQ=255)
                                             AGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCa                         >  1:6349422‑M1/1‑67 (MQ=255)
                                              GAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAg                        >  1:26357702‑M1/1‑67 (MQ=255)
                                                aTTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAgg                       >  1:38738877/1‑66 (MQ=255)
                                                aTTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAgg                       <  1:2048011/66‑1 (MQ=255)
                                                aTTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAgg                       <  1:41675140/66‑1 (MQ=255)
                                                aTTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAgg                       >  1:2320862/1‑66 (MQ=255)
                                                aTTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAgg                       <  1:1807145/66‑1 (MQ=255)
                                                aTTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAgg                       <  1:3051089/66‑1 (MQ=255)
                                                aTTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAgg                       <  1:13485730/66‑1 (MQ=255)
                                                  tttCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTa                   <  1:26908325/68‑1 (MQ=255)
                                                   ttCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTAc                  <  1:6499985/68‑1 (MQ=255)
                                                   ttCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTAc                  <  1:3912603/68‑1 (MQ=255)
                                                   ttCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTAc                  <  1:8308986/68‑1 (MQ=255)
                                                   ttCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTAc                  <  1:41222733/68‑1 (MQ=255)
                                                   ttCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTAc                  <  1:25832297/68‑1 (MQ=255)
                                                    tCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTAcc                 <  1:16593053/68‑1 (MQ=255)
                                                     cACTCCGGCGTTTTCATCTTAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGACTACCt                >  1:14890905/1‑68 (MQ=255)
                                                     cACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCt                >  1:11166743/1‑68 (MQ=255)
                                                     cACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCt                >  1:28514160/1‑68 (MQ=255)
                                                     cACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCt                >  1:21642625/1‑68 (MQ=255)
                                                       ctccggcgttttCATCTGAAAACAAACCAGAGATTGCCTGTTGCGCTACGCTTATCAGGCCTACCttt              <  1:5741946‑M2/56‑1 (MQ=255)
                                                       ctccggcgttttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCttt              >  1:6582058‑M2/13‑68 (MQ=255)
                                                        tccggcgttttCATCTGAAAACAAACCAGAGATTGCCTGCTGCGCTACGCTTATCAGGCCTACCtttt             <  1:7773656‑M2/57‑1 (MQ=255)
                                                        tccggcgttttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCtttt             <  1:25709635‑M2/57‑1 (MQ=255)
                                                         ccggcgttttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCtttt             >  1:28943402‑M2/11‑67 (MQ=255)
                                                         ccggcgttttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTc            <  1:37374626‑M2/58‑1 (MQ=255)
                                                           ggcgttttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCt          <  1:3136987‑M2/60‑1 (MQ=255)
                                                           ggcgttttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCt          <  1:24650022‑M2/60‑1 (MQ=255)
                                                                 ttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAaca    <  1:9157799‑M2/66‑1 (MQ=255)
                                                                  tCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAacac   <  1:30796679‑M2/67‑1 (MQ=255)
                                                                  tCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAacac   <  1:34963181‑M2/67‑1 (MQ=255)
                                                                  tCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAacac   <  1:40382647‑M2/67‑1 (MQ=255)
                                                                  tCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATAAGGCCTACCTTTTCCTGCAacac   <  1:42903584‑M2/67‑1 (MQ=255)
                                                                   cATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACt  <  1:12338263/68‑1 (MQ=255)
                                                                   |                                                                   
CTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACT  >  CP009273/1685592‑1685726

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.