| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1685627 = | 289 (0.550) | 13 (0.030) | 5/88 | NT | 5.4% | intergenic (+10/+216) | ydgA/uidC | DUF945 family protein/putative outer membrane porin for beta‑glucuronides porin protein |
| ? | CP009273 | 1685659 = | NA (NA) | intergenic (+42/+184) | ydgA/uidC | DUF945 family protein/putative outer membrane porin for beta‑glucuronides porin protein | |||||
Only 100 of 399 total aligned reads displayed.
CATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGC > CP009273/1685560‑1685692 | gtgttgcaggaaaaggtaggccttataagcgtagcgcatcaggcaatctctggtttgttttcagatga < 1:42903584‑M1/1‑1 (MQ=255)gtgttgcaggaaaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatga < 1:34963181‑M1/1‑1 (MQ=255)gtgttgcaggaaaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatga < 1:41695495‑M1/1‑1 (MQ=255)gtgttgcaggaaaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatga < 1:40382647‑M1/1‑1 (MQ=255)gtgttgcaggaaaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatga < 1:40207249‑M1/1‑1 (MQ=255)gtgttgcaggaaaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatga < 1:30796679‑M1/1‑1 (MQ=255)cATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCa > 1:11569348/1‑68 (MQ=255) tGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCaaa > 1:24148397/1‑68 (MQ=255) tGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATACCGCAGCACAAATTCACGGCCaaa > 1:37060901/1‑68 (MQ=255) ttGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACg < 1:1203072/68‑1 (MQ=255) tGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACg > 1:2245164/1‑67 (MQ=255) gCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGcc > 1:10975190/1‑68 (MQ=255) aggaaaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatgAAAACGcc < 1:3136987‑M1/8‑1 (MQ=255) aggaaaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatgAAAACGcc < 1:32787720‑M1/8‑1 (MQ=255) aggaaaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatgAAAACGcc < 1:34487678‑M1/8‑1 (MQ=255) aggaaaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatgAAAACGcc < 1:19767775‑M1/8‑1 (MQ=255) gaaaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatgAAAACGCCgg < 1:19339512‑M1/10‑1 (MQ=255) gATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCgg > 1:23928036/1‑68 (MQ=255) gATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCgg > 1:26824484/1‑68 (MQ=255) aaaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatgAAAACGcc > 1:21515713‑M1/58‑65 (MQ=255) aaaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatgAAAACGCCgg > 1:3479774‑M1/58‑67 (MQ=255) aaaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatgAAAACGCCgg > 1:28943402‑M1/58‑67 (MQ=255) aaaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatgAAAACGCCGga < 1:24641401‑M1/11‑1 (MQ=255) aaaaggtaggcctgataagcgtagcgcagcaggcaatctctggtttgttttcagatgAAAACGCCGga < 1:7773656‑M1/11‑1 (MQ=255) tGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTAACGGCCAAAACGCCGgag > 1:14223520/1‑68 (MQ=255) aaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatgAAAACGCCGgag < 1:24317650‑M1/12‑1 (MQ=255) aaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatgAAAACGCCGgag > 1:21964579‑M1/57‑68 (MQ=255) cAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGaa < 1:8538154/67‑1 (MQ=255) ctctTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAAttt > 1:16382851/1‑67 (MQ=255) tctTAACGTTCCGGCTGTACCGGCACTTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTc > 1:36693019/1‑68 (MQ=255) tctTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTc > 1:43370492/1‑68 (MQ=255) tctTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTc > 1:13100516/1‑68 (MQ=255) aCGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTcc > 1:13499112/1‑68 (MQ=255) aCGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTcc > 1:22648648/1‑68 (MQ=255) aCGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTcc > 1:42001692/1‑68 (MQ=255) aCGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTcc > 1:28378760/1‑68 (MQ=255) aCGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTcc > 1:27028877/1‑68 (MQ=255) aCGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTcc > 1:17458502/1‑68 (MQ=255) aCGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTcc > 1:28139402/1‑68 (MQ=255) cGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCg > 1:46618/1‑68 (MQ=255) cGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCg > 1:6828558/1‑68 (MQ=255) cGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCg > 1:10015726/1‑68 (MQ=255) cGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCg > 1:17797176/1‑68 (MQ=255) gTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCgg < 1:37718854/68‑1 (MQ=255) gTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCgg < 1:18073655/68‑1 (MQ=255) ttCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGc > 1:16036353/1‑68 (MQ=255) ccGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGt < 1:11840570/68‑1 (MQ=255) ccGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGt < 1:33239936/68‑1 (MQ=255) gCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGttt > 1:32426234/1‑67 (MQ=255) cTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACGCCGGCGTTTTc > 1:6538398/1‑68 (MQ=255) tGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCa > 1:39685305/1‑68 (MQ=255) tACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCa > 1:11334282/1‑66 (MQ=255) tACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCa > 1:33569073/1‑66 (MQ=255) aCCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCa > 1:9381121/1‑65 (MQ=255) aCCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCa > 1:20996277/1‑65 (MQ=255) cGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGa > 1:18628604/1‑68 (MQ=255) cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa < 1:17363983/67‑1 (MQ=255) cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa < 1:30326190/67‑1 (MQ=255) cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa > 1:39434279/1‑67 (MQ=255) gcaatctctggtttgttttcagatgAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaac < 1:5916027‑M1/43‑1 (MQ=255) aTTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaaca < 1:37328740/68‑1 (MQ=255) ttCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaa < 1:26704043/68‑1 (MQ=255) ttCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaa > 1:31179748/1‑68 (MQ=255) ttCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaa < 1:15381227/68‑1 (MQ=255) tCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaa < 1:33421303/68‑1 (MQ=255) tCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaa < 1:43073225/68‑1 (MQ=255) ccGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaac < 1:2481599/68‑1 (MQ=255) ccGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaac < 1:25033468/68‑1 (MQ=255) tctggtttgttttcagatgAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCa < 1:29850841‑M1/49‑1 (MQ=255) gcagTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCagag > 1:27745736/1‑68 (MQ=255) gcagTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCagag > 1:39925234/1‑68 (MQ=255) agTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCaga < 1:34443379/65‑1 (MQ=255) agTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAgaga < 1:25863429/67‑1 (MQ=255) ttgttttcagatgAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGAtt < 1:29979802‑M1/55‑1 (MQ=255) aaTTCACGGCCAAAACGCCGTAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg < 1:8108165/67‑1 (MQ=255) aaTTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg < 1:25632471/67‑1 (MQ=255) aaTTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg < 1:12704812/67‑1 (MQ=255) aaTTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGc < 1:16718644/68‑1 (MQ=255) ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg > 1:6122661/1‑65 (MQ=255) ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg > 1:36580116/1‑65 (MQ=255) ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg > 1:38062671/1‑65 (MQ=255) ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg > 1:35654166/1‑65 (MQ=255) ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg > 1:10208444/1‑65 (MQ=255) ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCt < 1:39123105/68‑1 (MQ=255) tCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTg > 1:7224518/1‑68 (MQ=255) tCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTg > 1:36210442/1‑68 (MQ=255) cACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGa < 1:42632664/68‑1 (MQ=255) cACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGa > 1:36400261/1‑68 (MQ=255) ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc < 1:22909734/68‑1 (MQ=255) ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc < 1:21220014/68‑1 (MQ=255) ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc < 1:5533764/68‑1 (MQ=255) ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc < 1:2052192/68‑1 (MQ=255) ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc < 1:23173069/68‑1 (MQ=255) ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc < 1:40774484/68‑1 (MQ=255) ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc < 1:13841623/68‑1 (MQ=255) ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc < 1:29590853/68‑1 (MQ=255) ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc < 1:3884367/68‑1 (MQ=255) ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc < 1:9194072/68‑1 (MQ=255) gCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc > 1:14908086/1‑67 (MQ=255) ccAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc > 1:27265228/1‑66 (MQ=255) | CATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGC > CP009273/1685560‑1685692 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |