New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2230114	NA (NA)	8 (0.020) +CTACAATAAGCTC	4/86	NT	NA	noncoding (102/150 nt)	REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences
	?	CP009273	= 2230185	NA (NA)					intergenic (+206/+37)	preA/mglC	dihydropyrimidine dehydrogenase, NADH‑dependent, subunit C/methyl‑galactoside transporter subunit

AGGCCGGATAAAACGCGCCAGCGTTGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/2230081‑2230114 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AACATCATGATCTGTGTGGTTTTGTAGGCCGG  <  CP009273/2230185‑2230154                                   |||||||||||||                                 AGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCCTACAATAAGCTCAACATACTGATTTGTATGGT              <  1:20530491/67‑1    CCGGATAAAACGCGCCAGCGTTGCATCCGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTT            <  1:4542427/66‑1           AAACGCGCCAGCGTTGCATCCGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCG   <  1:18559680/68‑1           AAACGCGCCAGCGTTGCATCCGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCG   <  1:28324853/68‑1           AAACGCGCCAGCGTTGCATCCGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCG   <  1:39000551/68‑1            AACGCGCCAGCGTTGCATCCGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGG  <  1:14920717/68‑1            AACGCGCCAGCGTTGCATCCGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGG  <  1:17524767/68‑1            AACGCGCCAGCGTTGCATCCGCCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGG  <  1:30903716/68‑1                                   |||||||||||||                                 AGGCCGGATAAAACGCGCCAGCGTTGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/2230081‑2230114 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AACATCATGATCTGTGTGGTTTTGTAGGCCGG  <  CP009273/2230185‑2230154

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.