| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2230114 | NA (NA) | 8 (0.020) +CTACAATAAGCTC |
4/86 | NT | NA | noncoding (102/150 nt) | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | CP009273 | = 2230185 | NA (NA) | intergenic (+206/+37) | preA/mglC | dihydropyrimidine dehydrogenase, NADH‑dependent, subunit C/methyl‑galactoside transporter subunit | |||||
Only 100 of 894 total aligned reads displayed.
AAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGA > CP009273/2230047‑2230181 | taaacgcacataacatcatgatctgtgtggttttgtaggccggataaggcgttcacgccGCATCCGGc > 1:28862925‑M1/60‑68 (MQ=255)taaacgcacataacatcatgatctgtgtggttttgtaggccggataaggcgttcacgccGCATCCGGc > 1:11442644‑M1/60‑68 (MQ=255)aaaaCCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGc < 1:20368963/68‑1 (MQ=255) aaCCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCAt < 1:22603665/68‑1 (MQ=255) aCCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCAtt > 1:25630776/1‑68 (MQ=255) aCCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCAtt > 1:14657490/1‑68 (MQ=255) aCCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCAtt > 1:22189907/1‑68 (MQ=255) cATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTg < 1:8351853/68‑1 (MQ=255) aTACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTgg < 1:30753200/68‑1 (MQ=255) aCAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGc > 1:24102435/1‑67 (MQ=255) taacatcatgatctgtgtggttttgtaggccggataaggcgttcacgccGCATCCGGCATTTGGCTcc > 1:25319456‑M1/50‑68 (MQ=255) aaTCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCt > 1:8604830/1‑65 (MQ=255) aaTCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCt < 1:11866618/68‑1 (MQ=255) aaTCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCt < 1:36751452/68‑1 (MQ=255) aaTCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCt < 1:19385017/68‑1 (MQ=255) tCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGt > 1:7710924/1‑68 (MQ=255) tCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGt > 1:16296734/1‑68 (MQ=255) tCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGt > 1:17315799/1‑68 (MQ=255) aTGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCg > 1:42763706/1‑68 (MQ=255) aTGTTGAGCTTAATGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCg < 1:1547699/68‑1 (MQ=255) tGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCgg < 1:536447/68‑1 (MQ=255) gTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATGCGGCATTTGGCTCCTGTTGCCGGa > 1:6116354/1‑68 (MQ=255) gTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGa > 1:28564262/1‑68 (MQ=255) gTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGa > 1:40391273/1‑68 (MQ=255) gTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGa > 1:2592358/1‑68 (MQ=255) ttGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGAt > 1:37447520/1‑68 (MQ=255) tGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGAt > 1:39993643/1‑67 (MQ=255) gAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATgc > 1:3963840/1‑68 (MQ=255) gAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATgc > 1:697323/1‑68 (MQ=255) gCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATgcg > 1:15266374/1‑67 (MQ=255) gCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATgcg > 1:31752629/1‑67 (MQ=255) gCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATgcg > 1:7257085/1‑67 (MQ=255) gtggttttgtaggccggataaggcgttcacgccGCATCCGGCATTTGGCTCCTGTTGCCGgatgcaac > 1:40176839‑M1/34‑65 (MQ=255) ttATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATgcggcg > 1:4444930/1‑68 (MQ=255) tATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGt < 1:13413499/68‑1 (MQ=255) tGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGa > 1:908517/1‑67 (MQ=255) gTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAAc > 1:3932229/1‑68 (MQ=255) gTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAAc > 1:26277364/1‑68 (MQ=255) gTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAAc > 1:30040278/1‑68 (MQ=255) aGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACg > 1:40791785/1‑67 (MQ=255) aGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACg < 1:29657321/67‑1 (MQ=255) aGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGc < 1:38799146/68‑1 (MQ=255) aGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGc < 1:19150998/68‑1 (MQ=255) aGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGc < 1:18417664/68‑1 (MQ=255) aGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGc < 1:42339239/68‑1 (MQ=255) ggCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACg > 1:13901615/1‑66 (MQ=255) gCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCt > 1:37859104/1‑68 (MQ=255) gCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCt > 1:9454229/1‑68 (MQ=255) gCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCt > 1:26737852/1‑68 (MQ=255) gCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCt > 1:18850142/1‑68 (MQ=255) gCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCt > 1:21050123/1‑68 (MQ=255) ccGGATAAAACGCGCCAGCGTTGCTTCCGGCATTTGGCTCCTGTTGCCGGATGAGGCGTGAACGCCtt > 1:13059266/1‑68 (MQ=37) ccGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCtt > 1:37145804/1‑68 (MQ=255) ccGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCtt > 1:11034019/1‑68 (MQ=255) ccGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCtt > 1:35590831/1‑68 (MQ=255) ccGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCtt > 1:34344745/1‑68 (MQ=255) aCGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCt < 1:39038629/68‑1 (MQ=255) cgcgCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCt > 1:32837756/1‑67 (MQ=255) gcgttcacgccGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGGGAACGCCGTATCCGGCCTAc < 1:30468117‑M1/57‑1 (MQ=255) cAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACaaa < 1:10439615/67‑1 (MQ=255) cAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACaaa < 1:35064912/67‑1 (MQ=255) acgccGCCTCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAcc < 1:43019957‑M1/63‑1 (MQ=255) gTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACcac < 1:21428020/68‑1 (MQ=255) gTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACcac < 1:15869179/68‑1 (MQ=255) gTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACcac < 1:33628463/68‑1 (MQ=255) gTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACcac < 1:12093984/68‑1 (MQ=255) gTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACcac < 1:17921625/68‑1 (MQ=255) gTTGCATCCGGCATTTGGCACCTGTTGCCGCATGCGGCGTGAACGCCTTATCCGGCCTACAAAACcac > 1:21738268/1‑68 (MQ=255) tGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACcaca < 1:43335341/67‑1 (MQ=255) tGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACcaca < 1:33918425/67‑1 (MQ=255) ATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGa > 1:12351180‑M1/1‑68 (MQ=255) ATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGa > 1:19966462‑M1/1‑68 (MQ=255) ATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGa > 1:17690413‑M1/1‑68 (MQ=255) ATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGa > 1:42130676‑M1/1‑68 (MQ=255) ATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGa > 1:38476976‑M1/1‑68 (MQ=255) ATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGa > 1:1689841‑M1/1‑68 (MQ=255) ATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGa > 1:33227398‑M1/1‑68 (MQ=255) ATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGa > 1:24730693‑M1/1‑68 (MQ=255) ATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGa > 1:31173865‑M1/1‑68 (MQ=255) ATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGa > 1:27887421‑M1/1‑68 (MQ=255) TCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGAt > 1:1001357‑M1/1‑68 (MQ=255) TCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGAt > 1:28171583‑M1/1‑68 (MQ=255) TCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGAt > 1:41215890‑M1/1‑68 (MQ=255) TCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGAt > 1:18620176‑M1/1‑68 (MQ=255) TCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGAt > 1:19712457‑M1/1‑68 (MQ=255) TCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGAt > 1:23026499‑M1/1‑68 (MQ=255) TCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGAt > 1:237002‑M1/1‑68 (MQ=255) TCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGAt > 1:31999110‑M1/1‑68 (MQ=255) CCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATc > 1:38272385‑M1/1‑68 (MQ=255) CCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATc > 1:27396764‑M1/1‑68 (MQ=255) CCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATc > 1:10709031‑M1/1‑68 (MQ=255) CCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATc > 1:12686005‑M1/1‑68 (MQ=255) CCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATc > 1:36244702‑M1/1‑68 (MQ=255) CCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATc > 1:32280759‑M1/1‑68 (MQ=255) CCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATc > 1:7988798‑M1/1‑68 (MQ=255) GGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACTGATCat > 1:29186932‑M1/1‑68 (MQ=255) GGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCat > 1:6368425‑M1/1‑68 (MQ=255) GGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCat > 1:36418637‑M1/1‑68 (MQ=255) GGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCat > 1:24368679‑M1/1‑68 (MQ=255) GCATTTGGCTACTGTTGCCGGATGCTGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCat > 1:41779745‑M1/1‑67 (MQ=255) | AAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGA > CP009273/2230047‑2230181 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |