BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2230114	NA (NA)	8 (0.020) +CTACAATAAGCTC	4/86	NT	NA	noncoding (102/150 nt)	REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences
*	?	CP009273	= 2230185	NA (NA)	8 (0.020) +CTACAATAAGCTC	4/86	NT	NA	intergenic (+206/+37)	preA/mglC	dihydropyrimidine dehydrogenase, NADH‑dependent, subunit C/methyl‑galactoside transporter subunit

Only 100 of 703 total aligned reads displayed.

TGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGAATCC  >  CP009273/2230118‑2230252

 ggagccaaatgccggatgcGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTa                                                                    >  1:25319456‑M2/20‑68 (MQ=255)

  gCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTAt                                                                   >  1:28366605/1‑68 (MQ=255)

  gCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTAt                                                                   >  1:31532304/1‑68 (MQ=255)

  gCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTAt                                                                   >  1:32789567/1‑68 (MQ=255)

     ccTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTAAtgt                                                                 >  1:40763424/1‑67 (MQ=255)

        gTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGt                                                             <  1:43628286/68‑1 (MQ=255)

        gTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGt                                                             <  1:23574607/68‑1 (MQ=255)

        gTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGt                                                             <  1:39736881/68‑1 (MQ=255)

        gTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGt                                                             <  1:34420456/68‑1 (MQ=255)

            ccggatgcGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTAt                                                         >  1:22422304‑M2/9‑68 (MQ=255)

            ccggatgcGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTAt                                                         >  1:32066854‑M2/9‑68 (MQ=255)

             cggatgcGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATg                                                        >  1:10892668‑M2/8‑68 (MQ=255)

               gatgcGGCGTGAACGCCTTATCCGGCCTACAAACCCCCACAGATCATGATGTTAGGTGCGGTTAtgc                                                       >  1:39094101‑M2/6‑66 (MQ=255)

               gatgcGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGa                                                       >  1:38140779‑M2/6‑67 (MQ=255)

                  gcGGCGTGAACGCCTTATCCGGCCTACGAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGa                                                   >  1:14027141‑M2/3‑68 (MQ=255)

                    ggcgTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGaa                                                  <  1:4248591/67‑1 (MQ=255)

                      cgTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGc                                               >  1:24582894/1‑68 (MQ=255)

                         gAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGa                                            <  1:37237760/68‑1 (MQ=255)

                         gAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGa                                            <  1:26043879/68‑1 (MQ=255)

                           aCGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGAc                                           <  1:35182993/67‑1 (MQ=255)

                             gCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACcac                                        <  1:24966128/68‑1 (MQ=255)

                             gCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACcac                                        <  1:7061267/68‑1 (MQ=255)

                             gCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACcac                                        <  1:17352905/68‑1 (MQ=255)

                             gCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACcac                                        <  1:29137005/68‑1 (MQ=255)

                               cTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACcaca                                       <  1:42150534/67‑1 (MQ=255)

                               cTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACcaca                                       <  1:10420944/67‑1 (MQ=255)

                               cTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACcaca                                       <  1:21175829/67‑1 (MQ=255)

                                   tCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTcac                                  >  1:2004721/1‑68 (MQ=255)

                                   tCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTcac                                  >  1:8751708/1‑68 (MQ=255)

                                   tCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTcac                                  >  1:26253028/1‑68 (MQ=255)

                                    ccGGCCTACAAAACCATACAAATCAGTATGTTgagcttattgtagggcggatgcaacgctggcgcgtt                                 <  1:30903716‑M2/68‑37 (MQ=255)

                                    ccGGCCTACAAAACCATACAAATCAGTATGTTgagcttattgtaggccggatgcaacgctggcgcgtt                                 <  1:14920717‑M2/68‑37 (MQ=255)

                                    ccGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTcaca                                 <  1:13315187/68‑1 (MQ=255)

                                    ccGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTcaca                                 <  1:34032021/68‑1 (MQ=255)

                                    ccGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTcaca                                 <  1:3624919/68‑1 (MQ=255)

                                    ccGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTcaca                                 <  1:36571750/68‑1 (MQ=255)

                                    ccGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTcaca                                 <  1:30520545/68‑1 (MQ=255)

                                     cGGCCTACAAAACCATACAAATCAGTATGTTgagcttattgtaggccggatgcaacgctggcgcgttt                                <  1:18559680‑M2/68‑38 (MQ=255)

                                     cGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTcaca                                 >  1:27810737/1‑67 (MQ=255)

                                     cGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTcaca                                 >  1:42787564/1‑67 (MQ=255)

                                      ggCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCAcatc                               <  1:14285412/68‑1 (MQ=255)

                                        ccTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCAcatca                              <  1:7386520/67‑1 (MQ=255)

                                         cTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCAtt                            <  1:26581193/68‑1 (MQ=255)

                                         cTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCAtt                            >  1:3029682/1‑68 (MQ=255)

                                           aCAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTc                          <  1:22954996/68‑1 (MQ=255)

                                              aaaCCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCtt                        >  1:2972275/1‑67 (MQ=255)

                                              aaaCCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCtt                        >  1:37002195/1‑67 (MQ=255)

                                                aCCATACAAATCAGTATGTTgagcttattgtaggccggatgcaacgctggcgcgttttatccggcct                      <  1:20530491‑M2/67‑48 (MQ=255)

                                                aCCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTAc                      >  1:12992107/1‑67 (MQ=255)

                                                aCCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTAc                      >  1:40385360/1‑67 (MQ=255)

                                                aCCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTAc                      >  1:9470185/1‑67 (MQ=255)

                                                aCCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTAc                      >  1:17014007/1‑67 (MQ=255)

                                                aCCACACAGATCATGATCTTATGTGCGTAAATCACCCAATGCCCACCACATTCACAACATTACTTAcg                     >  1:9117721/1‑68 (MQ=255)

                                                  cacacaGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTAcgcg                   <  1:10177210/68‑1 (MQ=255)

                                                  cacacaGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTAcgcg                   <  1:41784900/68‑1 (MQ=255)

                                                     acaGATCATGATGTTATGTGCGTTTATGTCCGAATGCGGACCACATTCACATCATTTCTTACGCGCGt                >  1:11940549/1‑68 (MQ=255)

                                                     acaGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGt                >  1:16065051/1‑68 (MQ=255)

                                                     acaGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGt                <  1:24190668/68‑1 (MQ=255)

                                                     acaGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGt                <  1:15267748/68‑1 (MQ=255)

                                                     acaGATCATGATGTTATGTGCGTTTATGACCGAAAGCGGACCACATTCACATCATTTCTTACGCCCGt                >  1:19608877/1‑68 (MQ=255)

                                                       aGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTAt              >  1:27168035/1‑68 (MQ=255)

                                                       aGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTAt              >  1:32267162/1‑68 (MQ=255)

                                                        gATCATGATGTTATGTTCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTAtt             >  1:13629700/1‑68 (MQ=255)

                                                          tCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTc           >  1:3122163/1‑68 (MQ=255)

                                                          tCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTc           >  1:7870533/1‑68 (MQ=255)

                                                             tgatgTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGt        >  1:25759206/1‑68 (MQ=255)

                                                               atgTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGa      >  1:5952189/1‑68 (MQ=255)

                                                               atgTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGa      >  1:5690894/1‑68 (MQ=255)

                                                               atgTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGa      >  1:5044414/1‑68 (MQ=255)

                                                               atgTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGa      >  1:23220416/1‑68 (MQ=255)

                                                               atgTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGa      >  1:12188315/1‑68 (MQ=255)

                                                               atgTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGa      >  1:41440685/1‑68 (MQ=255)

                                                               atgTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGa      >  1:11472305/1‑68 (MQ=255)

                                                               atgTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGa      >  1:5297138/1‑68 (MQ=255)

                                                               atgTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGa      >  1:43124319/1‑68 (MQ=255)

                                                               atgTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGa      >  1:19143672/1‑68 (MQ=255)

                                                               atgTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGa      >  1:650907/1‑68 (MQ=255)

                                                               atgTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGa      >  1:18922378/1‑68 (MQ=255)

                                                               atgTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGa      >  1:35756532/1‑68 (MQ=255)

                                                               atgTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGa      >  1:836103/1‑68 (MQ=255)

                                                               atgTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGa      >  1:2684788/1‑68 (MQ=255)

                                                               atgTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGa      >  1:33713018/1‑68 (MQ=255)

                                                               atgTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGa      >  1:31824712/1‑68 (MQ=255)

                                                               atgTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGa      >  1:16513201/1‑68 (MQ=255)

                                                               atgTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGa      >  1:28759171/1‑68 (MQ=255)

                                                               atgTTATCTGCGTTTATGACCGAATGCGGACCACAATCACATCAATTCTTACGATCGTATTTCAgaga      >  1:20782805/1‑68 (MQ=255)

                                                                 gTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGaa     >  1:4565455/1‑67 (MQ=255)

                                                                 gTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGaa     >  1:22594847/1‑67 (MQ=255)

                                                                 gTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGaa     >  1:40062281/1‑67 (MQ=255)

                                                                 gTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGaa     >  1:8099327/1‑67 (MQ=255)

                                                                 gTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGaa     >  1:14607595/1‑67 (MQ=255)

                                                                 gTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGaa     >  1:21804947/1‑67 (MQ=255)

                                                                 gTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGaa     >  1:33204760/1‑67 (MQ=255)

                                                                 gTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGaa     >  1:27992527/1‑67 (MQ=255)

                                                                 gTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGAAt    <  1:11318660/68‑1 (MQ=255)

                                                                 gTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGAAt    <  1:37848398/68‑1 (MQ=255)

                                                                 gTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGAAt    <  1:17888558/68‑1 (MQ=255)

                                                                 gTTATGTGCGTTTATGACCGAATGCGCACCACATTCACATCATTTCTTACGCGCGTATTTCAGTCaa     >  1:12568978/1‑67 (MQ=255)

                                                                   tATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGAATcc  >  1:38571080/1‑68 (MQ=255)

                                                                   tATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGAATcc  >  1:18174795/1‑68 (MQ=255)

TGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGAATCC  >  CP009273/2230118‑2230252

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.