| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2279605 = | 411 (0.780) | 24 (0.060) | 7/86 | NT | 7.9% | coding (1751/1761 nt) | yejM | essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor |
| ? | CP009273 | 2279638 = | 244 (0.600) | intergenic (+23/‑52) | yejM/proL | essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor/tRNA‑Pro | |||||
Only 100 of 192 total aligned reads displayed.
GGCTGCTAATACTACCGTTTTCCACACCGATTGCAAGTAAGATATTTCGCTAACTGATTTATAATTAATCAGTTAGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/2279683‑2279605‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatcagttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCA > CP009273/2279638‑2279703 GCTGCTAATACTACCGTTTTCCACACCGATTGCAAGTAAGATATTTCGCTAACTGATTTATAATTAA > 1:39721957/1‑67 GCTGCTAATACTACCGTTTTCCACACCGATTGCAAGTAAGATATTTCGCTAACTGATTTATAATTAA > 1:18610684/1‑67 GCTGCTAATACTACCGTTTTCCACACCGATTGCAAGTAAGATATTTCGCTAACTGAATTATAATTAA > 1:18371016/1‑67 GCTGCTAATACTACCGTTTTCCACACCGAATGCAAGTAAGATATTTCGCTAACTGATATAAAATTAA > 1:21854436/1‑67 CTGCTAATACTACCGTTTTCCACACCGATTGCAAGTAAGATATTTCGCTAACTGATTTATAATTAATC > 1:8392599/1‑68 CTGCTAATACTACCGTTTTCCACACCGATTGCAAGTAAGATATTTCGCTAACTGATTTATAATTAAT < 1:15482918/67‑1 GCTAATACTACCGTTTTCCACACCGATTGCAAGTAAGATATTTCGCTAACTGATTTATAATTAATCAG < 1:35417746/68‑1 GCTAATACTACCGTTTTCCACACCGATTGCAAGTAAGATATTTCGCTAACTGATTTATAATTAATCAG < 1:12638604/68‑1 GCTAATACTACCGTTTTCCACACCGATTGCAAGTAAGATATTTCGCTAACTGATTTATAATTAATCAG < 1:38578052/68‑1 GCTAATACTACCGTTTTCCACACCGATTGCAAGTAAGATATTTCGCTAACTGATTTATAATTAATCAG > 1:14713922/1‑68 TAATACTACCGTTTTCCACACCGATTGCAAGTAAGATATTTCGCTAACTGATTTATAATTAATCAGT < 1:29865905/67‑1 TAATACTACCGTTTTCCACACCGATTGCAAGTAAGATATTTCGCTAACTGATTTATAATTAATCAGT < 1:6432852/67‑1 TAATACTACCGTTTTCCACACCGATTGCAAGTAAGATATTTCGCTAACTGATTTATAATTAATCAGT < 1:42300361/67‑1 ATACTACCGTTTTCCACACCGATTGCAAGTAAGATATTTCGCTAACTGATTTATAATTAATCAGTTA > 1:8882293/1‑67 ATACTACCGTTTTCCACACCGATTGCAAGTAAGATATTTCGCTAACTGATTTATAATTAATCAGTTA > 1:38259536/1‑67 TACTACCGTTTTCCACACCGATTGCAAGTAAGATATTTCGCTAACTGATTTATAATTAATCAGTTAGC > 1:1587615/1‑68 TACTACCGTTTTCCACACCGATTGCAAGTAAGATATTTCGCTAACTGATTTATAATTAATCAGTTAGC > 1:1423286/1‑68 TACTACCGTTTTCCACACCGATTGCAAGTAAGATATTTCGCTAACTGATTTATAATTAATCAGTTAGC < 1:19755033/68‑1 ACTACCGTTTTCCACACCGATTGCAAGTAAGATATTTCGCTAACTGATTTATAATTAATCAGTTAGCG > 1:20897496/1‑68 ACTACCGTTTTCCACACCGATTGCAAGTAAGATATTTCGCTAACTGATTTATAATTAATCAGTTAGCG > 1:25133362/1‑68 ACTACCGTTTTCCACACCGATTGCAAGTAAGATATTTCGCTAACTGATTTATAATTAATCAGTTAGCG < 1:11657137/68‑1 ACTACCGTTTTCCACACCGATTGCAAGTAAGATATTTCGCTAACTGATTTATAATTAATCAGTTAGCG < 1:362715/68‑1 ACTACCGTTTTCCACACCGATTGCAAGTAAGATATTTCGCTAACTGATTTATAATTAATCAGTTAGCG > 1:22480627/1‑68 ACTACCGTTTTCCACACCGATTGCAAGTAAGATATTTCGCTAACTGATTTATAATTAATCAGTTAGCG > 1:441532/1‑68 CTACCGTTTTCCACACCGATTGCAAGTAGGATATTTCGCTAACTGATTTATAATTAATCAGTTAGCGA > 1:39396236/1‑68 CTACCGTTTTCCACACCGATTGCAAGTAAGATATTTCGCTAACTGATTTATAATTAATCAGTTAGCta > 1:22136736/1‑66 CTACCGTTTTCCACACCGATTGCAAGTAAGATATTTCGCTAACTGATTTATAATTAATCAGTTAGCGA > 1:34441601/1‑68 CTACCGTTTTCCACACCGATTGCAAGTAAGATATTTCGCTAACTGATTTATAATTAATCAGTTAGCGA > 1:3498960/1‑68 CTACCGTTTTCCACACCGATTGCAAGTAAGATATTTCGCTAACTGATTTATAATTAATCAGTTAGCGA > 1:27630521/1‑68 CTACCGTTTTCCACACCGATTGCAAGTAAGATATTTCGCTAACTGATTTATAATTAATCAGTTAGCGA > 1:38325323/1‑68 CTACCGTTTTCCACACCGATTGCAAGTAAGATATTTCGCTAACTGATTTATAATTAATCAGTTAGCGA > 1:35015806/1‑68 CTACCGTTTTCCACACCGATTGCAAGTAAGATATTTCGCTAACTGATTTATAATTAATCAGTTAGCGA > 1:34255640/1‑68 CTACCGTTTTCCACACCGATTGCAAGTAAGATATTTCGCTAACTGATTTATAATTAATCAGTTAGCGA > 1:30243492/1‑68 CTACCGTTTTCCACACCGATTGCAAGTAAGATATTTCGCTAACTGATTTATAATTAATCAGTTAGCGA > 1:33593456/1‑68 CTACCGTTTTCCACACCGATTGCAAGTAAGATATTTCGCTAACTGATTTATAATTAATCAGTTAGCGA > 1:26208271/1‑68 CTACCGTTTTCCACACCGATTGCAAGTAAGATATTTCGCTAACTGATTTATAATTAATCAGTTAGCGA > 1:32531356/1‑68 CTACCGTTTTCCACACCGATTGCAAGTAAGATATTTCGCTAACTGATTTATAATTAATCAGTTAGCGA > 1:32638463/1‑68 CTACCGTTTTCCACACCGATTGCAAGTAAGATATTTCGCTAACTGATTTATAATTAATCAGTTAGCGA > 1:40656089/1‑68 CTACCGTTTTCCACACCGATTGCAAGTAAGATATTTCGCTAACTGATTTATAATTAATCAGTTAGCGA > 1:43205574/1‑68 CTACCGTTTTCCACACCGATTGCAAGTAAGATATTTCGCTAACTGATTTATAATTAATCAGTTAGCGA > 1:42510633/1‑68 CTACCGTTTTCCACACCGATTGCAAGTAAGATATTTCGCTAACTGATTTATAATTAATCAGTTAGCGA > 1:19295954/1‑68 CTACCGTTTTCCACACCGATTGCAAGTAAGATATTTCGCTAACTGATTTATAATTAATCAGTTAGCGA > 1:13415519/1‑68 CTACCGTTTTCCACACCGATTGCAAGTAAGATATTTCGCTAACTGATTTATAATTAATCAGTTAGCGA > 1:21116391/1‑68 taGCAAGTAAGATATTTCGCTAACTGATTTATAATTAATCAGTTAGCGAAATATCTTACTTGCA < 1:39947100/62‑1 TGCAAGTAAGATATTTCGCTAACTGATTTATAATTAATCAGTTAGCGAAATATCTTACTTGCAATCGG < 1:37051364/68‑1 GCAAGTAAGATATTTCGCTAACTGATTTATAATTAATCAGTTAGCGAAATATCTTACTTGCAATCGGT < 1:20220308/68‑1 GCAAGTAAGATATTTCGCTAACTGATTTATAATTAATCAGTTAGCGAAATATCTTACTTGCAATCGGT < 1:8662205/68‑1 GCAAGTAAGATATTTCGCTAACTGATTTATAATTAATCAGTTAGCGAAATATCTTACTTGCAATCGGT < 1:31352491/68‑1 GCAAGTAAGATATTTCGCTAACTGATTTATAATTAATCAGTTAGCGAAATATCTTACTTGCAATCGGT < 1:15654504/68‑1 GCAAGTAAGATATTTCGCTAACTGATTTATAATTAATCAGTTAGCGAAATATCTTACTTGCAATCGGT < 1:23507478/68‑1 AGTAAGATATTTCGCTAACTGATTTATAATAAATCAGTAAGCGAAATATCTTACTTGCAATCGGTGTG < 1:30980320/68‑1 AAGATATTTCGCTAACTGATTTATAATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGA < 1:28402152/67‑1 aATTTCGCAACCTGATTTATAATTAATCAGTTAGCGAAAAATCTAACTTGCAATCGGTGTGGAAAAC < 1:664509/66‑1 ccCTAACTGATTTAAAATTAATCAGTTAGCGAAATATCTTACTTGCAAGCGGTGTGGAAAACGGTAGT < 1:7279909/66‑1 AATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGG < 1:30697945/68‑1 AATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCG > 1:10634958/1‑67 AATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCG > 1:33130390/1‑67 ATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGC > 1:33225939/1‑68 ATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGC < 1:2251097/68‑1 ATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGC < 1:41284703/68‑1 ATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGC > 1:28037344/1‑68 ATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGC > 1:13954350/1‑68 ATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGC > 1:9253161/1‑68 ATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACCAGTAGGC > 1:41604188/1‑68 TCAGTTAGCGAAATATCTTACTTGCAATCTGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGC > 1:6707008/1‑67 TCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGC > 1:14422114/1‑67 TCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGC > 1:5967529/1‑67 TCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGC > 1:1571639/1‑67 TCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGC > 1:43137159/1‑67 TCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGC > 1:42641768/1‑67 TCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGC > 1:19864066/1‑67 TCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGC > 1:20552803/1‑67 TCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGC > 1:9545422/1‑67 TCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGC > 1:38819328/1‑67 TCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGC > 1:24096935/1‑67 TCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGC > 1:28617246/1‑67 TCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGC > 1:26691646/1‑67 TCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGC > 1:380721/1‑67 TCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGC > 1:25640002/1‑67 TCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCAACGAGTCGGC > 1:4440903/1‑67 CAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCAC < 1:5427700/68‑1 CAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCAC < 1:13695273/68‑1 CAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCAC < 1:16664081/68‑1 CAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCAC < 1:23656710/68‑1 CAGTTAGCGAAATATCTTACTTGCAATCGGTGAGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCAC < 1:28855147/68‑1 AGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACG > 1:506930/1‑68 AGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACG > 1:16527411/1‑68 AGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACG > 1:8994734/1‑68 TAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTA < 1:26836052/67‑1 TAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGT < 1:15623589/66‑1 AGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGC < 1:22980850/68‑1 AGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGC < 1:26979632/68‑1 AGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGC < 1:8083587/68‑1 GAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCA < 1:17317089/68‑1 GAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCA < 1:25531764/68‑1 GAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCA < 1:1063107/68‑1 AAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCA > 1:31683192/1‑67 AAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCA > 1:34201712/1‑67 AAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCA > 1:10765283/1‑67 AAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCA < 1:68440/67‑1 GGCTGCTAATACTACCGTTTTCCACACCGATTGCAAGTAAGATATTTCGCTAACTGATTTATAATTAATCAGTTAGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/2279683‑2279605‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatcagttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCA > CP009273/2279638‑2279703 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |