| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2279605 = | 411 (0.780) | 24 (0.060) | 7/86 | NT | 7.9% | coding (1751/1761 nt) | yejM | essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor |
| ? | CP009273 | 2279638 = | 244 (0.600) | intergenic (+23/‑52) | yejM/proL | essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor/tRNA‑Pro | |||||
Only 100 of 583 total aligned reads displayed.
TTATTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGC > CP009273/2279571‑2279705 | aTTGCTAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAat > 1:7342544/1‑68 (MQ=255) aTTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAat < 1:8730335/68‑1 (MQ=255) aTTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAat < 1:1990396/68‑1 (MQ=255) aTTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAat < 1:6480988/68‑1 (MQ=255) aTTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAat < 1:3238455/68‑1 (MQ=255) tGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAatat < 1:5698859/68‑1 (MQ=255) tGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAatat < 1:29903072/68‑1 (MQ=255) gCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATc < 1:11062687/68‑1 (MQ=255) gCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATc < 1:26049802/68‑1 (MQ=255) cAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCt > 1:7100006/1‑68 (MQ=255) aaGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCt < 1:11507011/67‑1 (MQ=255) aaGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCt < 1:36610548/67‑1 (MQ=255) cacaccgattgcaagtaagatattTCGCTTACTGATTTATTATAAATCAGTTAGCGAAATATCTTACt < 1:30980320‑M1/44‑1 (MQ=255) gCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACtt > 1:40824318/1‑68 (MQ=255) gCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACtt > 1:37265502/1‑68 (MQ=255) gCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACt < 1:38104994/67‑1 (MQ=255) gCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACt < 1:26804859/67‑1 (MQ=255) gCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACt < 1:1338193/67‑1 (MQ=255) tGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTg < 1:14669412/67‑1 (MQ=255) tGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTg < 1:26291938/67‑1 (MQ=255) tGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTg < 1:31358786/67‑1 (MQ=255) aCAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCaa > 1:40309908/1‑68 (MQ=255) cAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCaa > 1:39692081/1‑67 (MQ=255) cAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTAAGCGAAATATCTTACTTGCaa > 1:30612256/1‑67 (MQ=255) aGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATc > 1:1189938/1‑68 (MQ=255) gACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCg > 1:38353112/1‑68 (MQ=255) gACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCg > 1:18262046/1‑68 (MQ=255) aCGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCgg > 1:16312019/1‑68 (MQ=255) gcaagtaagatatttcgctaactgatttataattaatcagttagcgaAATATCTTACTTGCAATCGgt < 1:20220308‑M2/21‑1 (MQ=255) gcaagtaagatatttcgctaactgatttataattaatcagttagcgaAATATCTTACTTGCAATCGgt < 1:13721648‑M2/21‑1 (MQ=255) gcaagtaagatatttcgctaactgatttataattaatcagttagcgaAATATCTTACTTGCAATCGgt < 1:2132796‑M2/21‑1 (MQ=255) cGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGgt < 1:23163455/68‑1 (MQ=255) cGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGgt < 1:10115707/68‑1 (MQ=255) cGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGgt < 1:31868261/68‑1 (MQ=255) cGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGgt < 1:22579208/68‑1 (MQ=255) cGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGgt < 1:19639562/68‑1 (MQ=255) cGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGgt < 1:34882867/68‑1 (MQ=255) cGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGgt < 1:41451162/68‑1 (MQ=255) gagaAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGATATATCTTACTTGCAATCGgtg > 1:39145839/1‑68 (MQ=255) gaAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGgtgt < 1:27233490/67‑1 (MQ=255) aGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTgg < 1:29235173/67‑1 (MQ=255) aGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGa < 1:326396/68‑1 (MQ=255) atcatatttctctaactgatttataattaatcagttagcgaAATATCTTACTTGCAATCGGTGTGGa < 1:28410864‑M2/26‑1 (MQ=255) aagatatttcgctaactgatttataattaatcagttagcgaAATATCTTACTTGCAATCGGTGTGGa < 1:14782838‑M2/26‑1 (MQ=255) cGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGaaa > 1:2499540/1‑68 (MQ=255) gTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGaaa < 1:5052176/67‑1 (MQ=255) tttATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAAc < 1:2454619/67‑1 (MQ=255) tttATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAAc < 1:36972126/67‑1 (MQ=255) tttATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACg < 1:43460238/68‑1 (MQ=255) tttATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACg < 1:9586951/68‑1 (MQ=255) ttATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACgg < 1:24041566/68‑1 (MQ=255) tATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgt < 1:22361434/68‑1 (MQ=255) tATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgt < 1:17819553/68‑1 (MQ=255) tATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgt < 1:12456653/68‑1 (MQ=255) aTCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgta < 1:23336440/68‑1 (MQ=255) aTCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgta > 1:3517154/1‑68 (MQ=255) TCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgtag > 1:3355208‑M1/1‑68 (MQ=255) TCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgtag > 1:665845‑M1/1‑68 (MQ=255) TCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgtag > 1:27630521‑M1/1‑68 (MQ=255) CGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgtagt < 1:11657137‑M1/68‑1 (MQ=255) GCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgtagta > 1:14237989‑M1/1‑68 (MQ=255) GCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgtagta > 1:1587615‑M1/1‑68 (MQ=255) ACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTa < 1:42300361‑M1/67‑1 (MQ=255) CTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTagc < 1:38578052‑M1/68‑1 (MQ=255) GATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTagcag > 1:9073412‑M1/1‑68 (MQ=255) TTAATTTTATATCAGTTAGCGAAATATCTTACTTGCATTCGGTGTGGAAAACGGTAGTATTagcagc > 1:21854436‑M1/1‑67 (MQ=255) TTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTagcagc > 1:18610684‑M1/1‑67 (MQ=255) TTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGcc > 1:35810715‑M1/1‑68 (MQ=255) attaTAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACg > 1:12950938/1‑68 (MQ=255) attaTAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACg > 1:21142864/1‑68 (MQ=255) tataAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAg > 1:3985983/1‑68 (MQ=255) tataAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAg > 1:43011631/1‑68 (MQ=255) tataAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAg < 1:25317040/68‑1 (MQ=255) tataAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAg < 1:22947843/68‑1 (MQ=255) tataAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAg > 1:37770810/1‑68 (MQ=255) tataAATCAGTTAGCGAAATAACTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACgcg > 1:29797575/1‑66 (MQ=255) aatcagttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCg > 1:33130390‑M2/14‑67 (MQ=255) atcagttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGc > 1:28037344‑M2/13‑68 (MQ=255) tcagttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGc > 1:20552803‑M2/12‑67 (MQ=255) tcagttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGc > 1:42641768‑M2/12‑67 (MQ=255) tcagttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGc > 1:25640002‑M2/12‑67 (MQ=255) tcagttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACCAGTCGGc > 1:23580032‑M2/12‑67 (MQ=255) tcagttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGATAGTATTAGCAGCCACGAGTCGGc > 1:8153554‑M2/12‑67 (MQ=255) cagttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCAc < 1:5427700‑M2/58‑1 (MQ=255) cagttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCAc < 1:16664081‑M2/58‑1 (MQ=255) cagttagcgaAATATCTTACTTGCAATCGGTGAGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCAc < 1:28855147‑M2/58‑1 (MQ=255) agttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACg > 1:16976446‑M2/10‑68 (MQ=255) tagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGt < 1:15623589‑M2/60‑1 (MQ=255) agcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAgc < 1:34201725‑M2/63‑1 (MQ=255) gaAATATCTTCCTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCa < 1:43193830‑M2/66‑1 (MQ=255) aAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCa < 1:68440‑M2/66‑1 (MQ=255) aAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCa > 1:10765283‑M2/2‑67 (MQ=255) aaTATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGTGCAGc < 1:15197454/68‑1 (MQ=255) aaTATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGc < 1:4459418/68‑1 (MQ=255) aaTATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGc < 1:40021031/68‑1 (MQ=255) aaTATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGc < 1:33849141/68‑1 (MQ=255) aaTATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGc < 1:1908900/68‑1 (MQ=255) aaTATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGc < 1:15420045/68‑1 (MQ=255) aaTATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGc < 1:8586052/68‑1 (MQ=255) aaTATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGc < 1:10533079/68‑1 (MQ=255) | TTATTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGC > CP009273/2279571‑2279705 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |