| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2732272 = | NA (NA) | 6 (0.010) | 5/88 | NT | NA | intergenic (+8/+35) | pheA/tyrA | chorismate mutase and prephenate dehydratase, P‑protein/fused chorismate mutase T/prephenate dehydrogenase |
| ? | CP009273 | 2732300 = | NA (NA) | intergenic (+36/+7) | pheA/tyrA | chorismate mutase and prephenate dehydratase, P‑protein/fused chorismate mutase T/prephenate dehydrogenase | |||||
Only 100 of 212 total aligned reads displayed.
AAGCCGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCATCCGGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/2732349‑2732272‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcatccggcacTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAACGCT > CP009273/2732300‑2732365 AAGCCGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACAT < 1:149404/68‑1 aggCGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATC > 1:20642757/4‑68 AGCCGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATC < 1:10140084/68‑1 AGCCGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATC > 1:38728586/1‑68 AGCCGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATC > 1:34824284/1‑68 AGCCGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATC > 1:30748071/1‑68 AGCCGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATC > 1:27331959/1‑68 AGCCGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATC > 1:26612142/1‑68 AGCCGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATC > 1:25933897/1‑68 AGCCGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATC > 1:43271790/1‑68 AGCCGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATC > 1:17717753/1‑68 AGCCGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATC > 1:14566538/1‑68 AGCCGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATC > 1:9397600/1‑68 AGCCGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATC > 1:12298285/1‑68 AGCCGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACAT > 1:18512546/1‑67 GCCGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATTATTCACATCA > 1:13578834/1‑68 GCCGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCA > 1:35712733/1‑68 GCCGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCA > 1:31512490/1‑68 GCCGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCA > 1:393042/1‑68 GCCGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCA > 1:20042873/1‑68 CCGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCA > 1:24604181/1‑67 CCGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCA > 1:2023380/1‑67 CCGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCA > 1:6836918/1‑67 CCGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCA > 1:36753760/1‑67 CGCGTGTTATTTCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCAT < 1:9279277/67‑1 CGCGTGTTATTGCGTCTGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCAT < 1:15148376/67‑1 CGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCAT < 1:4128402/67‑1 CGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCAT < 1:28421358/67‑1 CGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCAT < 1:12452011/67‑1 CGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCAT < 1:30678807/67‑1 CGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCAT < 1:13011742/67‑1 CGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCAT < 1:41700762/67‑1 CGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCAT < 1:32577778/67‑1 CGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCAT < 1:32915922/67‑1 CGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCAT < 1:33259562/67‑1 CGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCAT < 1:18677433/67‑1 CGCGTGTTATTGCGGCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCATC < 1:29766531/68‑1 GCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCATCC > 1:25747259/1‑68 ATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCCCATCATCCGGCACTGGATTATTACTGGCG < 1:804991/68‑1 ATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCATCCGGCACTGGATTATTACTGGC < 1:29221923/67‑1 TGCCGGATGATTCACATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAA < 1:16272902/67‑1 ATCCTCCGCCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCAC > 1:1196849/1‑66 ATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGCCGCAATAACACGCGGCTTTCAC > 1:35621291/1‑66 ATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACT < 1:34643469/67‑1 ATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCAC > 1:33792991/1‑66 ATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCAC > 1:27208277/1‑66 ATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCAC > 1:42880331/1‑66 ATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCAC > 1:19850539/1‑66 ATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCAC > 1:19482274/1‑66 ATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCAC > 1:19362401/1‑66 ATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCAC > 1:39587287/1‑66 TCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCAC > 1:28705524/1‑65 TCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCAC > 1:1612050/1‑65 TCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCAC > 1:40410414/1‑65 TCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCAC > 1:24104381/1‑65 TCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCAC > 1:36587802/1‑65 TCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCAC > 1:38475477/1‑65 TCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCAC > 1:41428279/1‑65 TCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCAC > 1:39798438/1‑65 TCATCCGGCACTGGATTATTACTGGCGATTGTCAATCGCCTGACCCAATAACACGCGGCTTTCAC > 1:14516199/1‑65 CATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTt < 1:19249198/68‑2 CATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTG < 1:37315154/68‑1 CATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTG < 1:41103321/68‑1 CATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTG < 1:40599595/68‑1 CATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTG < 1:509594/68‑1 CATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTG < 1:4676839/68‑1 CATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTG < 1:33697834/68‑1 CATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTG > 1:21281062/1‑68 CATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTG < 1:3623122/68‑1 CATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTG < 1:42608084/68‑1 CATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTG < 1:30371606/68‑1 CATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTG < 1:42353992/68‑1 CATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTG < 1:31497812/68‑1 ATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGA > 1:23647979/1‑68 TCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAA < 1:43334183/68‑1 TCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAA < 1:7590708/68‑1 CCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAA > 1:9714216/1‑68 CCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAA > 1:5476270/1‑68 CCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAA > 1:40759227/1‑68 CCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAA > 1:11490710/1‑68 CCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAA > 1:22699990/1‑68 GGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAAC < 1:20608723/68‑1 GCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAAC > 1:27688009/1‑67 CACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAACG < 1:34223494/67‑1 CACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAACG < 1:14094890/67‑1 CACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAACG < 1:15823478/67‑1 ACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAACGCT < 1:4610446/68‑1 ACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAACGCT < 1:713668/68‑1 ACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAACGCT < 1:11739261/68‑1 ACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAACGC < 1:32102644/67‑1 ACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAAC > 1:21494628/1‑65 ACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAAC > 1:20945544/1‑65 ACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAAC > 1:21878662/1‑65 ACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAAC > 1:178911/1‑65 ACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAAC > 1:5817113/1‑65 ACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAAC > 1:6677374/1‑65 ACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAAC > 1:16922437/1‑65 ACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAAC > 1:31042565/1‑65 ACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAAC > 1:3236630/1‑65 ACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAAC > 1:10839313/1‑65 AAGCCGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCATCCGGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/2732349‑2732272‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcatccggcacTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAACGCT > CP009273/2732300‑2732365 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |