| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2732272 = | NA (NA) | 6 (0.010) | 5/88 | NT | NA | intergenic (+8/+35) | pheA/tyrA | chorismate mutase and prephenate dehydratase, P‑protein/fused chorismate mutase T/prephenate dehydrogenase |
| ? | CP009273 | 2732300 = | NA (NA) | intergenic (+36/+7) | pheA/tyrA | chorismate mutase and prephenate dehydratase, P‑protein/fused chorismate mutase T/prephenate dehydrogenase | |||||
Only 100 of 743 total aligned reads displayed.
TGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAACGCTGT > CP009273/2732234‑2732367 | tGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTg > 1:29777140/1‑68 (MQ=255)tGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTg > 1:40058057/1‑68 (MQ=255)tGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTg > 1:17674758/1‑68 (MQ=255) gagaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTgg < 1:11228559/68‑1 (MQ=255) gagaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTgg < 1:26597584/68‑1 (MQ=255) gagaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTgg < 1:33156794/68‑1 (MQ=255) gagaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTgg < 1:21570010/68‑1 (MQ=255) gagaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTgg < 1:34565857/68‑1 (MQ=255) gagaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTgg < 1:7972305/68‑1 (MQ=255) gagaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTgg < 1:18926283/68‑1 (MQ=255) gagaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTgg < 1:3666360/68‑1 (MQ=255) gagaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGAGGTGAATCATCCGGCACTga < 1:22859849/68‑2 (MQ=255) gacaaCGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTgg < 1:32434311/65‑1 (MQ=255) agaACGTAGAGCGTGTTGATCCAAGCTGAACAAAAGGTGCCGGATGAGGTGAATCATCCGGCACTGGa < 1:28746625/68‑1 (MQ=37) gaACGTTGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGa < 1:39228112/67‑1 (MQ=255) gaACGTAGTGCGTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGa < 1:8593543/67‑1 (MQ=255) gaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGa < 1:26790523/67‑1 (MQ=255) gaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGa < 1:1708327/67‑1 (MQ=255) gaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGa < 1:14780607/67‑1 (MQ=255) gaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGa < 1:9257294/67‑1 (MQ=255) gaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGa < 1:22527198/67‑1 (MQ=255) gaACGTAGTGCCTGGTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGa < 1:43116981/67‑1 (MQ=255) aCGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGatta > 1:16218976/1‑68 (MQ=255) aCGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGatta > 1:12133967/1‑68 (MQ=255) aCGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGatta > 1:23713266/1‑68 (MQ=255) aCGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGatta > 1:23248329/1‑68 (MQ=255) aCGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGatta > 1:12702576/1‑68 (MQ=255) aCGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGatta > 1:41572476/1‑68 (MQ=255) aCGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGatta > 1:7719391/1‑68 (MQ=255) aCGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGatta > 1:34677787/1‑68 (MQ=255) cGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGattat > 1:15317105/1‑68 (MQ=255) gTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGattatt > 1:34992913/1‑68 (MQ=255) gTAGGGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGattatt < 1:39558051/68‑1 (MQ=255) aGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTAc < 1:13836574/68‑1 (MQ=255) gTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGattatt > 1:10815874/1‑65 (MQ=255) gCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTgg < 1:5731136/68‑1 (MQ=255) gCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTg > 1:37394161/1‑67 (MQ=255) gCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTg > 1:28309072/1‑67 (MQ=255) ccTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGc > 1:35826174/1‑68 (MQ=255) cTGTTGATCCAACCTGATGAATAGGTGCCGGATTATTTTAATCATCCGGCACTGGATTATTACAGGc < 1:5939962/67‑1 (MQ=255) tGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGa > 1:3341897/1‑68 (MQ=255) tttGATCCACCCTGATGATAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGAt < 1:13438065/67‑1 (MQ=255) ttGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGAtt > 1:26231396/1‑68 (MQ=255) gATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTg > 1:32600995/1‑67 (MQ=255) atcgccagtaataatccagtgccggatgattcacatcatccggcacTGGATTATTACTGGCGATTGTc < 1:25906492‑M2/22‑1 (MQ=255) cAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCAt > 1:29491136/1‑67 (MQ=255) ccTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCTTTCg > 1:37778411/1‑67 (MQ=255) ccTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCg > 1:42376538/1‑67 (MQ=255) ccTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCg > 1:10206723/1‑67 (MQ=255) ccTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCg > 1:10015967/1‑67 (MQ=255) ccTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCg > 1:24742749/1‑67 (MQ=255) ccTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCg > 1:6528856/1‑67 (MQ=255) ccTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGc < 1:16758120/68‑1 (MQ=255) cTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCg > 1:7346771/1‑66 (MQ=255) tgaAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGAc > 1:5176101/1‑68 (MQ=255) tgaAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGAc < 1:31994665/68‑1 (MQ=255) tgaAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGAc < 1:25547275/68‑1 (MQ=255) tgaAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGAc < 1:33627559/68‑1 (MQ=255) tgaAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGAc < 1:1594996/68‑1 (MQ=255) tgaAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGAc < 1:20074025/68‑1 (MQ=255) tgaAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGAc < 1:41177345/68‑1 (MQ=255) aaaaGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGc > 1:30472141/1‑68 (MQ=255) aaaGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGc < 1:38106678/67‑1 (MQ=255) aGGTGCCGGATGGTGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAAt > 1:24318145/1‑68 (MQ=255) aGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAAt < 1:29143723/68‑1 (MQ=255) aGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAAt > 1:19694547/1‑68 (MQ=255) aGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAAt > 1:20244160/1‑68 (MQ=255) ggTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATa > 1:40876667/1‑68 (MQ=255) CGGATGATGTGAATCATCCGGCACTGGATTATTACTGGGGATTGTCATTCGCCTGACGCAATAacac < 1:12438966‑M1/67‑1 (MQ=255) ATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACAcgcg < 1:13011742‑M1/67‑1 (MQ=255) ATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACAcgcg < 1:27901202‑M1/67‑1 (MQ=255) TGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCgg > 1:14344256‑M1/1‑67 (MQ=255) TGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCgg > 1:21293912‑M1/1‑67 (MQ=255) GATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCt > 1:9397600‑M1/1‑68 (MQ=255) GATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCt > 1:38728586‑M1/1‑68 (MQ=255) GATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCt < 1:11539068‑M1/68‑1 (MQ=255) GATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCt < 1:1791860‑M1/68‑1 (MQ=255) GATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCt > 1:21838757‑M1/1‑68 (MQ=255) GATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCt > 1:27331959‑M1/1‑68 (MQ=255) GATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCt > 1:31505297‑M1/1‑68 (MQ=255) tgAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTc > 1:8362959/1‑67 (MQ=255) aaTCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTg < 1:43408276/44‑1 (MQ=255) atcctccgccacTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCAc > 1:1196849‑M2/13‑66 (MQ=255) atcatccggcacTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCAct < 1:6983918‑M2/55‑1 (MQ=255) atcatccggcacTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCAc > 1:19362401‑M2/13‑66 (MQ=255) tcatccggcacTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCAc > 1:39798438‑M2/12‑65 (MQ=255) catccggcacTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTg < 1:30718247‑M2/58‑1 (MQ=255) catccggcacTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTg < 1:42803455‑M2/58‑1 (MQ=255) catccggcacTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTg < 1:34195868‑M2/58‑1 (MQ=255) atccggcacTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGa > 1:40724128‑M2/10‑68 (MQ=255) ccggcacTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGaaa > 1:5476270‑M2/8‑68 (MQ=255) acTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAAc > 1:20945544‑M2/3‑65 (MQ=255) acTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAAc > 1:36275111‑M2/3‑65 (MQ=255) acTGGATTATTACTGGCGATTGTCATTCGACTGACGCAATAACACGCGGCTTTCACTCTGAAAacggt > 1:20622614‑M2/3‑66 (MQ=255) tGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAACGCtgt < 1:4615873/68‑1 (MQ=255) tGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAACGCtgt < 1:30905248/68‑1 (MQ=255) tGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAACGCtgt < 1:33943715/68‑1 (MQ=255) tGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAACGCtgt < 1:41974746/68‑1 (MQ=255) tGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAACGCtgt < 1:35450055/68‑1 (MQ=255) tGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAACGCtgt < 1:36987913/68‑1 (MQ=255) | TGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAACGCTGT > CP009273/2732234‑2732367 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |