| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2732272 = | NA (NA) | 6 (0.010) | 5/88 | NT | NA | intergenic (+8/+35) | pheA/tyrA | chorismate mutase and prephenate dehydratase, P‑protein/fused chorismate mutase T/prephenate dehydrogenase |
| ? | CP009273 | 2732300 = | NA (NA) | intergenic (+36/+7) | pheA/tyrA | chorismate mutase and prephenate dehydratase, P‑protein/fused chorismate mutase T/prephenate dehydrogenase | |||||
Only 100 of 984 total aligned reads displayed.
TCAATGAAGGTATTGGGCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATA > CP009273/2732205‑2732338 | tCAATGAAGGTATTGGGCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAgg > 1:23232725/1‑68 (MQ=255)tCAATGAAGGTATTGGGCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAgg < 1:36253491/68‑1 (MQ=255) aaTGAAGGTATTGGGCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGt > 1:19187704/1‑67 (MQ=255) cgttttcagagtgaaagccgcgtgttattgcgtcaggcgaatgacaatcgccagtaataatccaGTg < 1:36660550‑M1/3‑1 (MQ=255) gttttcagagtgaaagccgcgtgttattgcgtcaggcgaatgacaatcgccagtaataatccaGt > 1:39014700‑M1/64‑65 (MQ=255) gAAGGTATTGGGCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCg > 1:39861183/1‑68 (MQ=255) gAAGGTATTGGGCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCg > 1:4617132/1‑68 (MQ=255) gAAGGTATTGGGCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCg > 1:26847321/1‑68 (MQ=255) tttcagagtgaaagccgcgtgttattgcgtcaggcgaatgacaatcgccagtaataatccaGTGCCgg > 1:32902773‑M1/62‑68 (MQ=255) aGGTATTGGGCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCgg < 1:42445379/67‑1 (MQ=255) tcagagtgaaagccgcgtgttattgcgtcaggcgaatgacaatcgccagtaataatccaGTGCCGgat > 1:23647979‑M1/60‑68 (MQ=255) tcagagtgaaagccgcgtgttattgcgtcaggcgaatgacaatcgccagtaataatccaGTGCCGgat > 1:20076508‑M1/60‑68 (MQ=255) tcagagtgaaagccgcgtgttattgcgtcaggcgaatgacaatcgccagtaataatccaGTGCCGgat > 1:40724128‑M1/60‑68 (MQ=255) ggTATTGGGCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGgat > 1:27224903/1‑68 (MQ=255) ggTATTGGGCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGgat > 1:42860039/1‑68 (MQ=255) gTATTGGGCTGTTACCCAAGTGAGAACGTAGTGCCTTTTGATCCAACCTGTTGAAAAGGTGCCGgatt > 1:29622064/1‑67 (MQ=255) cagagtgaaagccgcgtgttattgcgtcaggcgaatgacaatcgccagtaataatccaGTGCCGgatg < 1:31497812‑M1/10‑1 (MQ=255) tATTGGGCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGgatga > 1:19555016/1‑68 (MQ=255) tATTGGGCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGgatga > 1:31846807/1‑68 (MQ=255) aTTGGGCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGgatgat < 1:22180681/68‑1 (MQ=255) aTTGGGCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGgatgat < 1:11164486/68‑1 (MQ=255) aTTGGGCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGgatga < 1:26231466/67‑1 (MQ=255) aTTGGGCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGgatga < 1:40243898/67‑1 (MQ=255) ttGGGCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGatgatg < 1:25337199/68‑1 (MQ=255) agtgaaagccgcgtgttattgcgtcaggcgaatgacaatcgccagtaataatccaGTGCCGgatgat < 1:6983918‑M1/12‑1 (MQ=255) gtgaaagccgcgtgttattgggtcaggcgattgacaatcgccagtaataatccaGTGCCGgatga > 1:14516199‑M1/55‑65 (MQ=255) gtgaaagccgcgtgttattgcgtcaggcgaatgacaatcgccagtaataatccaGTGCCGgatgat > 1:15958409‑M1/55‑66 (MQ=255) gggCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGAtgtg > 1:25001477/1‑68 (MQ=255) ggCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGa > 1:41855522/1‑68 (MQ=255) gCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCTGATGATGTGaa > 1:35426594/1‑68 (MQ=255) gCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGaa > 1:28832865/1‑68 (MQ=255) gCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGaa > 1:29387931/1‑68 (MQ=255) gCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGaa > 1:10002308/1‑68 (MQ=255) gCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGaa > 1:2101366/1‑68 (MQ=255) gCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGaa > 1:18817500/1‑68 (MQ=255) gCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGaa > 1:18317309/1‑68 (MQ=255) gCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGaa > 1:8031587/1‑68 (MQ=255) gCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGaa > 1:12795379/1‑68 (MQ=255) gCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGaa > 1:6021622/1‑68 (MQ=255) tGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAatc > 1:37020670/1‑68 (MQ=255) tACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAatcatc < 1:8869190/68‑1 (MQ=255) tACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAatcat < 1:27604330/67‑1 (MQ=255) aCCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATcc > 1:33843524/1‑68 (MQ=255) ccAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCg > 1:40967424/1‑67 (MQ=255) cAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGc < 1:10203374/68‑1 (MQ=255) cAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGc < 1:30915417/68‑1 (MQ=255) cAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGc < 1:436086/68‑1 (MQ=255) cAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGc < 1:13617803/68‑1 (MQ=255) cAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGc < 1:15524037/68‑1 (MQ=255) aaGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGc > 1:30150762/1‑67 (MQ=255) aaGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGc > 1:35839888/1‑67 (MQ=255) aGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGc > 1:5019939/1‑66 (MQ=255) tGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTg > 1:17466709/1‑68 (MQ=255) tGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTg > 1:13229516/1‑68 (MQ=255) tGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTg > 1:20530574/1‑68 (MQ=255) gagaACGTAGTGCCTGTTGATCCAACCTGATGAAACGGTGCCGGATGATGTGAATCATCCGGCACt < 1:14992394/66‑1 (MQ=255) gagaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCAc < 1:41566364/65‑1 (MQ=255) gagaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACt < 1:25551984/66‑1 (MQ=255) gagaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTgg < 1:17854271/68‑1 (MQ=255) gagaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTgg < 1:37680253/68‑1 (MQ=255) gagaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTgg > 1:10809489/1‑68 (MQ=255) gagaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTgg < 1:24068038/68‑1 (MQ=255) gagaACGTAGTGCCTGGTGAGCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTgg < 1:34535775/68‑1 (MQ=255) gcaCGTCGTGCCTGTTGATCCCACCTGATCAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGa < 1:22828098/65‑1 (MQ=255) gaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGa < 1:1198168/67‑1 (MQ=255) gaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGa < 1:25904087/67‑1 (MQ=255) gaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATACGGCACTGGat > 1:20633559/1‑68 (MQ=255) aCGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGatta > 1:37949443/1‑68 (MQ=255) aCGTAGTGCCTGTTGATCAAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGatta > 1:8461809/1‑68 (MQ=255) cGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGattat > 1:737830/1‑68 (MQ=255) gTAGGGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGattatt < 1:39558051/68‑1 (MQ=255) aGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGattatt > 1:16990348/1‑66 (MQ=255) tGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTg > 1:7755173/1‑68 (MQ=255) gCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTgg < 1:12207366/68‑1 (MQ=255) gCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTg > 1:21363731/1‑67 (MQ=255) gCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTg > 1:3499543/1‑67 (MQ=255) ccTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGc > 1:37365133/1‑68 (MQ=255) cTGTTTATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGc < 1:6446976/67‑1 (MQ=255) gTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGAt < 1:5612704/68‑1 (MQ=255) ttGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGAtt > 1:26560403/1‑68 (MQ=255) tGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTg > 1:32412374/1‑68 (MQ=255) gATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTg > 1:21644052/1‑67 (MQ=255) gATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACAGGATTATTACTGGCGATTg > 1:38573581/1‑67 (MQ=255) tCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTc < 1:13887071/67‑1 (MQ=255) tCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCa > 1:33302476/1‑68 (MQ=255) ccAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCAt > 1:42270615/1‑68 (MQ=255) ccTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCg > 1:24511529/1‑67 (MQ=255) ccTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCg > 1:34055291/1‑67 (MQ=255) ccTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCg > 1:27995730/1‑67 (MQ=255) ccTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGc < 1:30497022/68‑1 (MQ=255) cTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCg > 1:9373631/1‑66 (MQ=255) tgaAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGAc < 1:43300302/68‑1 (MQ=255) tgaAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGAc < 1:41177345/68‑1 (MQ=255) tgaAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGAc < 1:11529317/68‑1 (MQ=255) gaAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACg < 1:1652220/68‑1 (MQ=255) gaAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACg < 1:3350080/68‑1 (MQ=255) aaaGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCa < 1:5437713/68‑1 (MQ=255) aaaGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCa < 1:12500941/68‑1 (MQ=255) aGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAAt > 1:34674635/1‑68 (MQ=255) aGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAAt > 1:28388113/1‑68 (MQ=255) | TCAATGAAGGTATTGGGCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATA > CP009273/2732205‑2732338 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |